Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD4P09016 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC14.82□□□□□ -0.04
HOXD4P09016 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
HOXD4P09016 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD4P09016 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC14.82□□□□□ -0.04
HOXD4P09016 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD4P09016 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD4P09016 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD4P09016 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD4P09016 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
HOXD4P09016 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HOXD4P09016 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HOXD4P09016 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC14.81□□□□□ -0.04
HOXD4P09016 AC006277.1-201ENST00000624348 1610 ntBASIC14.81□□□□□ -0.04
HOXD4P09016 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC14.81□□□□□ -0.04
HOXD4P09016 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
HOXD4P09016 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC14.81□□□□□ -0.04
HOXD4P09016 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HOXD4P09016 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HOXD4P09016 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HOXD4P09016 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC14.81□□□□□ -0.04
HOXD4P09016 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HOXD4P09016 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC14.81□□□□□ -0.04
HOXD4P09016 METTL26-204ENST00000397665 558 ntTSL 2 BASIC14.81□□□□□ -0.04
HOXD4P09016 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC14.81□□□□□ -0.04
HOXD4P09016 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
HOXD4P09016 AC002472.2-201ENST00000442739 958 ntBASIC14.81□□□□□ -0.04
HOXD4P09016 RBM7-207ENST00000544582 692 ntTSL 3 BASIC14.81□□□□□ -0.04
HOXD4P09016 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HOXD4P09016 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC14.81□□□□□ -0.04
HOXD4P09016 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC14.81□□□□□ -0.04
HOXD4P09016 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC14.81□□□□□ -0.04
HOXD4P09016 AL035252.4-201ENST00000624174 288 ntBASIC14.81□□□□□ -0.04
HOXD4P09016 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC14.81□□□□□ -0.04
HOXD4P09016 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC14.81□□□□□ -0.04
HOXD4P09016 AL139011.1-202ENST00000642063 584 ntBASIC14.81□□□□□ -0.04
HOXD4P09016 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXD4P09016 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXD4P09016 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXD4P09016 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC14.81□□□□□ -0.04
HOXD4P09016 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXD4P09016 DBET-201ENST00000630918 3363 ntBASIC14.81□□□□□ -0.04
HOXD4P09016 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXD4P09016 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HOXD4P09016 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXD4P09016 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
HOXD4P09016 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXD4P09016 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC14.81□□□□□ -0.04
HOXD4P09016 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC14.81□□□□□ -0.04
HOXD4P09016 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC14.81□□□□□ -0.04
HOXD4P09016 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HOXD4P09016 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXD4P09016 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
HOXD4P09016 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HOXD4P09016 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXD4P09016 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HOXD4P09016 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HOXD4P09016 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXD4P09016 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC14.8□□□□□ -0.04
HOXD4P09016 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
HOXD4P09016 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC14.8□□□□□ -0.04
HOXD4P09016 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXD4P09016 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC14.8□□□□□ -0.04
HOXD4P09016 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXD4P09016 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXD4P09016 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
HOXD4P09016 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXD4P09016 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
HOXD4P09016 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXD4P09016 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC14.8□□□□□ -0.04
HOXD4P09016 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
HOXD4P09016 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXD4P09016 AC236430.1-201ENST00000402231 743 ntBASIC14.8□□□□□ -0.04
HOXD4P09016 CENPM-205ENST00000404067 905 ntTSL 3 BASIC14.8□□□□□ -0.04
HOXD4P09016 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXD4P09016 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC14.8□□□□□ -0.04
HOXD4P09016 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
HOXD4P09016 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC14.8□□□□□ -0.04
HOXD4P09016 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC14.8□□□□□ -0.04
HOXD4P09016 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC14.8□□□□□ -0.04
HOXD4P09016 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC14.8□□□□□ -0.04
HOXD4P09016 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HOXD4P09016 RN7SL204P-201ENST00000582831 262 ntBASIC14.8□□□□□ -0.04
HOXD4P09016 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC14.8□□□□□ -0.04
HOXD4P09016 AC018529.1-201ENST00000613063 361 ntBASIC14.8□□□□□ -0.04
HOXD4P09016 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXD4P09016 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC14.8□□□□□ -0.04
HOXD4P09016 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC14.8□□□□□ -0.04
HOXD4P09016 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HOXD4P09016 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
HOXD4P09016 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
HOXD4P09016 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXD4P09016 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC14.8□□□□□ -0.04
HOXD4P09016 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
HOXD4P09016 RHBDF1P1-201ENST00000427504 1941 ntBASIC14.8□□□□□ -0.04
HOXD4P09016 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
HOXD4P09016 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXD4P09016 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXD4P09016 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXD4P09016 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms