Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AC092919.2-201ENST00000623631 1645 ntBASIC16.44■□□□□ 0.22
VIMP08670 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VIMP08670 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VIMP08670 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
VIMP08670 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
VIMP08670 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC16.44■□□□□ 0.22
VIMP08670 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
VIMP08670 AL359258.3-201ENST00000622910 2331 ntBASIC16.44■□□□□ 0.22
VIMP08670 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
VIMP08670 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC16.43■□□□□ 0.22
VIMP08670 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
VIMP08670 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VIMP08670 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VIMP08670 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
VIMP08670 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VIMP08670 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VIMP08670 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC16.43■□□□□ 0.22
VIMP08670 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
VIMP08670 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
VIMP08670 AC007292.2-201ENST00000593524 1812 ntBASIC16.43■□□□□ 0.22
VIMP08670 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
VIMP08670 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VIMP08670 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VIMP08670 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
VIMP08670 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VIMP08670 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VIMP08670 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
VIMP08670 SLC25A3P1-201ENST00000443844 931 ntBASIC16.43■□□□□ 0.22
VIMP08670 COX11P1-201ENST00000489116 835 ntBASIC16.43■□□□□ 0.22
VIMP08670 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.43■□□□□ 0.22
VIMP08670 TMA16-209ENST00000513272 803 ntTSL 2 BASIC16.43■□□□□ 0.22
VIMP08670 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VIMP08670 TERC-201ENST00000602385 541 ntBASIC16.43■□□□□ 0.22
VIMP08670 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC16.43■□□□□ 0.22
VIMP08670 AC124864.1-201ENST00000623408 392 ntBASIC16.43■□□□□ 0.22
VIMP08670 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VIMP08670 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
VIMP08670 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
VIMP08670 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
VIMP08670 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VIMP08670 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VIMP08670 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VIMP08670 CICP4-201ENST00000447359 2812 ntBASIC16.43■□□□□ 0.22
VIMP08670 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.43■□□□□ 0.22
VIMP08670 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC16.43■□□□□ 0.22
VIMP08670 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC16.43■□□□□ 0.22
VIMP08670 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VIMP08670 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
VIMP08670 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC16.43■□□□□ 0.22
VIMP08670 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
VIMP08670 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
VIMP08670 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
VIMP08670 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC16.42■□□□□ 0.22
VIMP08670 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
VIMP08670 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VIMP08670 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.42■□□□□ 0.22
VIMP08670 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC16.42■□□□□ 0.22
VIMP08670 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VIMP08670 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
VIMP08670 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
VIMP08670 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VIMP08670 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
VIMP08670 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
VIMP08670 AC007686.3-201ENST00000619017 3487 ntBASIC16.42■□□□□ 0.22
VIMP08670 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VIMP08670 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
VIMP08670 AC148477.5-201ENST00000625164 1645 ntBASIC16.42■□□□□ 0.22
VIMP08670 API5-202ENST00000420461 2009 ntTSL 2 BASIC16.42■□□□□ 0.22
VIMP08670 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
VIMP08670 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
VIMP08670 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VIMP08670 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.42■□□□□ 0.22
VIMP08670 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VIMP08670 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VIMP08670 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VIMP08670 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VIMP08670 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VIMP08670 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC16.42■□□□□ 0.22
VIMP08670 SNX5-210ENST00000481323 562 ntTSL 3 BASIC16.42■□□□□ 0.22
VIMP08670 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC16.42■□□□□ 0.22
VIMP08670 VENTXP5-201ENST00000523979 775 ntBASIC16.42■□□□□ 0.22
VIMP08670 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC16.42■□□□□ 0.22
VIMP08670 AC011840.4-201ENST00000578471 627 ntBASIC16.42■□□□□ 0.22
VIMP08670 AL353801.3-201ENST00000609898 542 ntBASIC16.42■□□□□ 0.22
VIMP08670 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
VIMP08670 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC16.42■□□□□ 0.22
VIMP08670 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
VIMP08670 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC16.42■□□□□ 0.22
VIMP08670 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VIMP08670 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VIMP08670 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VIMP08670 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC16.42■□□□□ 0.22
VIMP08670 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
VIMP08670 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VIMP08670 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
VIMP08670 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC16.42■□□□□ 0.22
VIMP08670 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VIMP08670 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VIMP08670 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VIMP08670 AC087481.3-201ENST00000602886 1894 ntBASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms