Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
COL1A1P02452 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL1A1P02452 HAUS4P1-201ENST00000406739 1145 ntBASIC19.33■□□□□ 0.68
COL1A1P02452 HIST1H2BPS3-201ENST00000419683 341 ntBASIC19.33■□□□□ 0.68
COL1A1P02452 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC19.33■□□□□ 0.68
COL1A1P02452 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC19.33■□□□□ 0.68
COL1A1P02452 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC19.33■□□□□ 0.68
COL1A1P02452 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
COL1A1P02452 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC19.33■□□□□ 0.68
COL1A1P02452 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC19.33■□□□□ 0.68
COL1A1P02452 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC19.33■□□□□ 0.68
COL1A1P02452 AC015936.2-201ENST00000593177 259 ntBASIC19.33■□□□□ 0.68
COL1A1P02452 AL512343.1-201ENST00000605837 169 ntBASIC19.33■□□□□ 0.68
COL1A1P02452 WFDC1-204ENST00000613603 549 ntBASIC19.33■□□□□ 0.68
COL1A1P02452 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
COL1A1P02452 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC19.33■□□□□ 0.68
COL1A1P02452 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
COL1A1P02452 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
COL1A1P02452 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC19.33■□□□□ 0.68
COL1A1P02452 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC19.32■□□□□ 0.68
COL1A1P02452 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL1A1P02452 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC19.32■□□□□ 0.68
COL1A1P02452 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
COL1A1P02452 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL1A1P02452 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL1A1P02452 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
COL1A1P02452 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC19.32■□□□□ 0.68
COL1A1P02452 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC19.32■□□□□ 0.68
COL1A1P02452 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
COL1A1P02452 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC19.32■□□□□ 0.68
COL1A1P02452 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL1A1P02452 RPL28-204ENST00000431533 590 ntTSL 2 BASIC19.32■□□□□ 0.68
COL1A1P02452 KRT223P-202ENST00000449164 1292 ntBASIC19.32■□□□□ 0.68
COL1A1P02452 AC092658.1-201ENST00000505836 891 ntBASIC19.32■□□□□ 0.68
COL1A1P02452 RPL28-206ENST00000558752 671 ntTSL 3 BASIC19.32■□□□□ 0.68
COL1A1P02452 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC19.32■□□□□ 0.68
COL1A1P02452 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC19.32■□□□□ 0.68
COL1A1P02452 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
COL1A1P02452 AIRN-201ENST00000601203 4374 ntBASIC19.32■□□□□ 0.68
COL1A1P02452 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL1A1P02452 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC19.32■□□□□ 0.68
COL1A1P02452 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC19.32■□□□□ 0.68
COL1A1P02452 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
COL1A1P02452 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC19.32■□□□□ 0.68
COL1A1P02452 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL1A1P02452 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL1A1P02452 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL1A1P02452 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL1A1P02452 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
COL1A1P02452 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC19.31■□□□□ 0.68
COL1A1P02452 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC19.31■□□□□ 0.68
COL1A1P02452 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL1A1P02452 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL1A1P02452 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL1A1P02452 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL1A1P02452 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL1A1P02452 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL1A1P02452 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC19.31■□□□□ 0.68
COL1A1P02452 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL1A1P02452 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC19.31■□□□□ 0.68
COL1A1P02452 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC19.31■□□□□ 0.68
COL1A1P02452 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL1A1P02452 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL1A1P02452 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL1A1P02452 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL1A1P02452 NSL1-201ENST00000366976 722 ntTSL 2 BASIC19.31■□□□□ 0.68
COL1A1P02452 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL1A1P02452 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC19.31■□□□□ 0.68
COL1A1P02452 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC19.31■□□□□ 0.68
COL1A1P02452 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL1A1P02452 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
COL1A1P02452 BOLA2P3-201ENST00000404566 256 ntBASIC19.31■□□□□ 0.68
COL1A1P02452 MPV17-208ENST00000405076 603 ntTSL 5 BASIC19.31■□□□□ 0.68
COL1A1P02452 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC19.31■□□□□ 0.68
COL1A1P02452 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
COL1A1P02452 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC19.31■□□□□ 0.68
COL1A1P02452 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC19.31■□□□□ 0.68
COL1A1P02452 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC19.31■□□□□ 0.68
COL1A1P02452 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL1A1P02452 AC008735.3-201ENST00000596646 500 ntBASIC19.31■□□□□ 0.68
COL1A1P02452 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL1A1P02452 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL1A1P02452 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
COL1A1P02452 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL1A1P02452 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC19.31■□□□□ 0.68
COL1A1P02452 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
COL1A1P02452 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
COL1A1P02452 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
COL1A1P02452 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL1A1P02452 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC19.3■□□□□ 0.68
COL1A1P02452 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
COL1A1P02452 REXO1L1P-202ENST00000608646 1974 ntBASIC19.3■□□□□ 0.68
COL1A1P02452 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL1A1P02452 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL1A1P02452 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC19.3■□□□□ 0.68
COL1A1P02452 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
COL1A1P02452 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC19.3■□□□□ 0.68
COL1A1P02452 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC19.3■□□□□ 0.68
COL1A1P02452 AC136604.1-201ENST00000418535 575 ntBASIC19.3■□□□□ 0.68
COL1A1P02452 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 71.8 ms