Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 KRT8P49-201ENST00000604166 1432 ntBASIC12.3□□□□□ -0.44
HLA-DQA1P01909 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 AL137784.3-201ENST00000623858 2288 ntBASIC12.3□□□□□ -0.44
HLA-DQA1P01909 PPP1R26P4-201ENST00000619065 3527 ntBASIC12.3□□□□□ -0.44
HLA-DQA1P01909 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 ANKRD20A18P-201ENST00000359341 492 ntBASIC12.3□□□□□ -0.44
HLA-DQA1P01909 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 AC113347.1-201ENST00000413321 391 ntBASIC12.3□□□□□ -0.44
HLA-DQA1P01909 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 ECEL1P3-201ENST00000427961 737 ntBASIC12.3□□□□□ -0.44
HLA-DQA1P01909 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 MDH2-205ENST00000461263 648 ntTSL 2 BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 TEN1-204ENST00000588202 862 ntTSL 3 BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
HLA-DQA1P01909 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 LINC00552-201ENST00000625151 2579 ntBASIC12.29□□□□□ -0.44
HLA-DQA1P01909 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 GPI-205ENST00000586425 1799 ntTSL 5 BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 AC103564.2-201ENST00000432853 1299 ntBASIC12.29□□□□□ -0.44
HLA-DQA1P01909 KRT18P57-201ENST00000443599 1254 ntBASIC12.29□□□□□ -0.44
HLA-DQA1P01909 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 NT5C-210ENST00000582160 860 ntTSL 2 BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 AL023973.1-201ENST00000624619 620 ntBASIC12.29□□□□□ -0.44
HLA-DQA1P01909 AL157888.1-201ENST00000631930 593 ntBASIC12.29□□□□□ -0.44
HLA-DQA1P01909 AC141257.4-201ENST00000634557 245 ntBASIC12.29□□□□□ -0.44
HLA-DQA1P01909 AC136944.6-201ENST00000634818 245 ntBASIC12.29□□□□□ -0.44
HLA-DQA1P01909 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DQA1P01909 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms