Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
VPS4BO75351 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VPS4BO75351 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VPS4BO75351 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS4BO75351 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VPS4BO75351 MIR648-201ENST00000385046 94 ntBASIC16.02■□□□□ 0.16
VPS4BO75351 AC092474.2-201ENST00000424288 719 ntBASIC16.02■□□□□ 0.16
VPS4BO75351 KRT18P27-201ENST00000427733 1299 ntBASIC16.02■□□□□ 0.16
VPS4BO75351 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.02■□□□□ 0.16
VPS4BO75351 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
VPS4BO75351 LHX6-205ENST00000464484 666 ntTSL 2 BASIC16.02■□□□□ 0.16
VPS4BO75351 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.02■□□□□ 0.16
VPS4BO75351 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC16.02■□□□□ 0.16
VPS4BO75351 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16.02■□□□□ 0.16
VPS4BO75351 MIR4751-201ENST00000578027 74 ntBASIC16.02■□□□□ 0.16
VPS4BO75351 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC16.02■□□□□ 0.16
VPS4BO75351 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.02■□□□□ 0.16
VPS4BO75351 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC16.02■□□□□ 0.16
VPS4BO75351 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS4BO75351 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VPS4BO75351 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
VPS4BO75351 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.15
VPS4BO75351 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
VPS4BO75351 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.02■□□□□ 0.15
VPS4BO75351 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VPS4BO75351 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
VPS4BO75351 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
VPS4BO75351 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
VPS4BO75351 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
VPS4BO75351 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC16.02■□□□□ 0.15
VPS4BO75351 SLC22A20-204ENST00000530038 1673 ntBASIC16.02■□□□□ 0.15
VPS4BO75351 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VPS4BO75351 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS4BO75351 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS4BO75351 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.01■□□□□ 0.15
VPS4BO75351 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS4BO75351 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS4BO75351 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VPS4BO75351 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VPS4BO75351 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
VPS4BO75351 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS4BO75351 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VPS4BO75351 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC16.01■□□□□ 0.15
VPS4BO75351 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC16.01■□□□□ 0.15
VPS4BO75351 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
VPS4BO75351 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS4BO75351 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS4BO75351 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS4BO75351 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS4BO75351 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS4BO75351 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS4BO75351 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.01■□□□□ 0.15
VPS4BO75351 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VPS4BO75351 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.01■□□□□ 0.15
VPS4BO75351 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.01■□□□□ 0.15
VPS4BO75351 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC16.01■□□□□ 0.15
VPS4BO75351 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.01■□□□□ 0.15
VPS4BO75351 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VPS4BO75351 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC16.01■□□□□ 0.15
VPS4BO75351 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC16.01■□□□□ 0.15
VPS4BO75351 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
VPS4BO75351 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC16.01■□□□□ 0.15
VPS4BO75351 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.01■□□□□ 0.15
VPS4BO75351 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.01■□□□□ 0.15
VPS4BO75351 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16.01■□□□□ 0.15
VPS4BO75351 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS4BO75351 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS4BO75351 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS4BO75351 ELL2P1-201ENST00000413990 1906 ntBASIC16.01■□□□□ 0.15
VPS4BO75351 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS4BO75351 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS4BO75351 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC16.01■□□□□ 0.15
VPS4BO75351 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
VPS4BO75351 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
VPS4BO75351 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VPS4BO75351 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS4BO75351 FLJ16779-201ENST00000612722 7638 ntBASIC16.01■□□□□ 0.15
VPS4BO75351 HLA-DQB2-231ENST00000435145 2026 ntBASIC16.01■□□□□ 0.15
VPS4BO75351 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS4BO75351 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VPS4BO75351 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VPS4BO75351 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
VPS4BO75351 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VPS4BO75351 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
VPS4BO75351 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VPS4BO75351 AC129492.6-201ENST00000611383 1305 ntBASIC16■□□□□ 0.15
VPS4BO75351 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VPS4BO75351 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
VPS4BO75351 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16■□□□□ 0.15
VPS4BO75351 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
VPS4BO75351 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC16■□□□□ 0.15
VPS4BO75351 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16■□□□□ 0.15
VPS4BO75351 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16■□□□□ 0.15
VPS4BO75351 AP005117.1-202ENST00000581724 1908 ntBASIC16■□□□□ 0.15
VPS4BO75351 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VPS4BO75351 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC16■□□□□ 0.15
VPS4BO75351 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC16■□□□□ 0.15
VPS4BO75351 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC16■□□□□ 0.15
VPS4BO75351 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC16■□□□□ 0.15
VPS4BO75351 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms