Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 AC023141.13-201ENST00000604991 943 ntBASIC13.22□□□□□ -0.29
FOXA2Q9Y261 AL645728.2-201ENST00000641974 660 ntBASIC13.22□□□□□ -0.29
FOXA2Q9Y261 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
FOXA2Q9Y261 AC063926.3-201ENST00000624734 5658 ntBASIC13.22□□□□□ -0.29
FOXA2Q9Y261 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA2Q9Y261 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA2Q9Y261 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA2Q9Y261 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA2Q9Y261 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA2Q9Y261 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA2Q9Y261 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA2Q9Y261 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA2Q9Y261 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA2Q9Y261 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA2Q9Y261 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA2Q9Y261 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA2Q9Y261 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA2Q9Y261 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA2Q9Y261 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA2Q9Y261 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.29
FOXA2Q9Y261 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC13.21□□□□□ -0.29
FOXA2Q9Y261 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC13.21□□□□□ -0.29
FOXA2Q9Y261 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC13.21□□□□□ -0.29
FOXA2Q9Y261 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
FOXA2Q9Y261 MTRF1LP2-201ENST00000506027 1122 ntBASIC13.21□□□□□ -0.29
FOXA2Q9Y261 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC13.21□□□□□ -0.29
FOXA2Q9Y261 MAL2-202ENST00000531508 892 ntTSL 3 BASIC13.21□□□□□ -0.29
FOXA2Q9Y261 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC13.21□□□□□ -0.29
FOXA2Q9Y261 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA2Q9Y261 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC13.21□□□□□ -0.29
FOXA2Q9Y261 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC13.21□□□□□ -0.29
FOXA2Q9Y261 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.29
FOXA2Q9Y261 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA2Q9Y261 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC13.21□□□□□ -0.29
FOXA2Q9Y261 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA2Q9Y261 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA2Q9Y261 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA2Q9Y261 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA2Q9Y261 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC13.21□□□□□ -0.3
FOXA2Q9Y261 AC005622.1-201ENST00000636801 1703 ntBASIC13.21□□□□□ -0.3
FOXA2Q9Y261 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
FOXA2Q9Y261 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
FOXA2Q9Y261 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.3
FOXA2Q9Y261 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC13.21□□□□□ -0.3
FOXA2Q9Y261 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
FOXA2Q9Y261 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
FOXA2Q9Y261 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
FOXA2Q9Y261 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
FOXA2Q9Y261 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
FOXA2Q9Y261 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC13.21□□□□□ -0.3
FOXA2Q9Y261 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 BCAR1-209ENST00000546196 1340 ntBASIC13.2□□□□□ -0.3
FOXA2Q9Y261 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA2Q9Y261 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms