Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
CCDC42Q96M95 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC42Q96M95 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC42Q96M95 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC42Q96M95 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC42Q96M95 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC42Q96M95 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC42Q96M95 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC42Q96M95 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC42Q96M95 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC17.63■□□□□ 0.41
CCDC42Q96M95 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC17.63■□□□□ 0.41
CCDC42Q96M95 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC42Q96M95 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC42Q96M95 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC17.63■□□□□ 0.41
CCDC42Q96M95 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
CCDC42Q96M95 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
CCDC42Q96M95 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC42Q96M95 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
CCDC42Q96M95 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CCDC42Q96M95 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC42Q96M95 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC42Q96M95 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
CCDC42Q96M95 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC42Q96M95 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CCDC42Q96M95 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
CCDC42Q96M95 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC17.62■□□□□ 0.41
CCDC42Q96M95 AC023824.1-201ENST00000562945 2975 ntBASIC17.62■□□□□ 0.41
CCDC42Q96M95 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC42Q96M95 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
CCDC42Q96M95 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC17.62■□□□□ 0.41
CCDC42Q96M95 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC17.62■□□□□ 0.41
CCDC42Q96M95 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC42Q96M95 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC42Q96M95 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC17.62■□□□□ 0.41
CCDC42Q96M95 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC42Q96M95 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC42Q96M95 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC42Q96M95 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC17.62■□□□□ 0.41
CCDC42Q96M95 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC17.62■□□□□ 0.41
CCDC42Q96M95 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC17.62■□□□□ 0.41
CCDC42Q96M95 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC17.62■□□□□ 0.41
CCDC42Q96M95 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.62■□□□□ 0.41
CCDC42Q96M95 SKP2-204ENST00000508514 821 ntTSL 3 BASIC17.62■□□□□ 0.41
CCDC42Q96M95 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC17.62■□□□□ 0.41
CCDC42Q96M95 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
CCDC42Q96M95 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC42Q96M95 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC17.62■□□□□ 0.41
CCDC42Q96M95 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC42Q96M95 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC42Q96M95 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC42Q96M95 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC17.62■□□□□ 0.41
CCDC42Q96M95 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC42Q96M95 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
CCDC42Q96M95 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC42Q96M95 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CCDC42Q96M95 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC42Q96M95 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC42Q96M95 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC42Q96M95 AP002414.2-201ENST00000591780 3365 ntBASIC17.62■□□□□ 0.41
CCDC42Q96M95 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CCDC42Q96M95 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC17.62■□□□□ 0.41
CCDC42Q96M95 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
CCDC42Q96M95 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC42Q96M95 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC17.61■□□□□ 0.41
CCDC42Q96M95 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC42Q96M95 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
CCDC42Q96M95 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC17.61■□□□□ 0.41
CCDC42Q96M95 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC17.61■□□□□ 0.41
CCDC42Q96M95 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC42Q96M95 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC17.61■□□□□ 0.41
CCDC42Q96M95 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
CCDC42Q96M95 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC42Q96M95 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC17.61■□□□□ 0.41
CCDC42Q96M95 CD99-202ENST00000381180 530 ntTSL 2 BASIC17.61■□□□□ 0.41
CCDC42Q96M95 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC17.61■□□□□ 0.41
CCDC42Q96M95 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC42Q96M95 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC42Q96M95 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC17.61■□□□□ 0.41
CCDC42Q96M95 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC17.61■□□□□ 0.41
CCDC42Q96M95 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC17.61■□□□□ 0.41
CCDC42Q96M95 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17.61■□□□□ 0.41
CCDC42Q96M95 NT5C-211ENST00000582170 653 ntTSL 3 BASIC17.61■□□□□ 0.41
CCDC42Q96M95 MIR4515-201ENST00000584082 81 ntBASIC17.61■□□□□ 0.41
CCDC42Q96M95 AC021097.1-201ENST00000607902 574 ntBASIC17.61■□□□□ 0.41
CCDC42Q96M95 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
CCDC42Q96M95 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC42Q96M95 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
CCDC42Q96M95 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC42Q96M95 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC42Q96M95 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
CCDC42Q96M95 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC42Q96M95 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC17.61■□□□□ 0.41
CCDC42Q96M95 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC42Q96M95 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC42Q96M95 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC42Q96M95 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC42Q96M95 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CCDC42Q96M95 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC42Q96M95 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CCDC42Q96M95 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms