Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC15.91■□□□□ 0.14
VRK3Q8IV63 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VRK3Q8IV63 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
VRK3Q8IV63 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
VRK3Q8IV63 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
VRK3Q8IV63 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VRK3Q8IV63 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VRK3Q8IV63 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC15.9■□□□□ 0.14
VRK3Q8IV63 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VRK3Q8IV63 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
VRK3Q8IV63 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC15.9■□□□□ 0.14
VRK3Q8IV63 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VRK3Q8IV63 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VRK3Q8IV63 AL139400.1-201ENST00000366220 510 ntBASIC15.9■□□□□ 0.14
VRK3Q8IV63 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VRK3Q8IV63 HLA-H-201ENST00000383620 1096 ntBASIC15.9■□□□□ 0.14
VRK3Q8IV63 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
VRK3Q8IV63 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
VRK3Q8IV63 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC15.9■□□□□ 0.14
VRK3Q8IV63 SPDYE14P-201ENST00000442619 822 ntBASIC15.9■□□□□ 0.14
VRK3Q8IV63 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VRK3Q8IV63 GATD1-206ENST00000526325 756 ntTSL 5 BASIC15.9■□□□□ 0.14
VRK3Q8IV63 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
VRK3Q8IV63 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC15.9■□□□□ 0.14
VRK3Q8IV63 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC15.9■□□□□ 0.14
VRK3Q8IV63 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VRK3Q8IV63 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VRK3Q8IV63 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC15.9■□□□□ 0.14
VRK3Q8IV63 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC15.9■□□□□ 0.14
VRK3Q8IV63 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
VRK3Q8IV63 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC15.9■□□□□ 0.14
VRK3Q8IV63 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC15.9■□□□□ 0.14
VRK3Q8IV63 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC15.9■□□□□ 0.14
VRK3Q8IV63 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VRK3Q8IV63 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
VRK3Q8IV63 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
VRK3Q8IV63 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
VRK3Q8IV63 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
VRK3Q8IV63 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC15.89■□□□□ 0.13
VRK3Q8IV63 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC15.89■□□□□ 0.13
VRK3Q8IV63 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
VRK3Q8IV63 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
VRK3Q8IV63 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
VRK3Q8IV63 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
VRK3Q8IV63 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VRK3Q8IV63 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
VRK3Q8IV63 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
VRK3Q8IV63 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC15.89■□□□□ 0.13
VRK3Q8IV63 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC15.89■□□□□ 0.13
VRK3Q8IV63 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC15.89■□□□□ 0.13
VRK3Q8IV63 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VRK3Q8IV63 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC15.89■□□□□ 0.13
VRK3Q8IV63 AC109322.1-201ENST00000524499 1264 ntBASIC15.89■□□□□ 0.13
VRK3Q8IV63 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC15.89■□□□□ 0.13
VRK3Q8IV63 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC15.89■□□□□ 0.13
VRK3Q8IV63 AC026150.2-201ENST00000564693 1156 ntBASIC15.89■□□□□ 0.13
VRK3Q8IV63 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC15.89■□□□□ 0.13
VRK3Q8IV63 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC15.89■□□□□ 0.13
VRK3Q8IV63 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC15.89■□□□□ 0.13
VRK3Q8IV63 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VRK3Q8IV63 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
VRK3Q8IV63 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VRK3Q8IV63 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VRK3Q8IV63 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VRK3Q8IV63 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
VRK3Q8IV63 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
VRK3Q8IV63 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VRK3Q8IV63 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VRK3Q8IV63 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC15.89■□□□□ 0.13
VRK3Q8IV63 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.89■□□□□ 0.13
VRK3Q8IV63 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VRK3Q8IV63 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VRK3Q8IV63 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
VRK3Q8IV63 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC15.88■□□□□ 0.13
VRK3Q8IV63 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VRK3Q8IV63 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
VRK3Q8IV63 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
VRK3Q8IV63 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
VRK3Q8IV63 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC15.88■□□□□ 0.13
VRK3Q8IV63 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VRK3Q8IV63 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VRK3Q8IV63 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VRK3Q8IV63 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
VRK3Q8IV63 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
VRK3Q8IV63 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
VRK3Q8IV63 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC15.88■□□□□ 0.13
VRK3Q8IV63 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC15.88■□□□□ 0.13
VRK3Q8IV63 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
VRK3Q8IV63 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC15.88■□□□□ 0.13
VRK3Q8IV63 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VRK3Q8IV63 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC15.88■□□□□ 0.13
VRK3Q8IV63 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC15.88■□□□□ 0.13
VRK3Q8IV63 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC15.88■□□□□ 0.13
VRK3Q8IV63 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC15.88■□□□□ 0.13
VRK3Q8IV63 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VRK3Q8IV63 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC15.88■□□□□ 0.13
VRK3Q8IV63 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
VRK3Q8IV63 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
VRK3Q8IV63 CDC14C-201ENST00000428251 1719 ntBASIC15.88■□□□□ 0.13
VRK3Q8IV63 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms