Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 AC026979.3-201ENST00000607315 403 ntBASIC13.34□□□□□ -0.27
VPS13CQ709C8 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC13.34□□□□□ -0.27
VPS13CQ709C8 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
VPS13CQ709C8 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
VPS13CQ709C8 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
VPS13CQ709C8 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
VPS13CQ709C8 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC13.34□□□□□ -0.27
VPS13CQ709C8 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
VPS13CQ709C8 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC13.34□□□□□ -0.27
VPS13CQ709C8 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC13.34□□□□□ -0.27
VPS13CQ709C8 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
VPS13CQ709C8 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
VPS13CQ709C8 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC13.33□□□□□ -0.27
VPS13CQ709C8 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
VPS13CQ709C8 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.27
VPS13CQ709C8 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC13.33□□□□□ -0.27
VPS13CQ709C8 AC079328.1-201ENST00000560358 952 ntBASIC13.33□□□□□ -0.27
VPS13CQ709C8 KC6-205ENST00000599934 556 ntTSL 4 BASIC13.33□□□□□ -0.27
VPS13CQ709C8 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.27
VPS13CQ709C8 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC13.33□□□□□ -0.27
VPS13CQ709C8 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC13.33□□□□□ -0.27
VPS13CQ709C8 RNF165-205ENST00000588679 2904 ntBASIC13.33□□□□□ -0.27
VPS13CQ709C8 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC13.33□□□□□ -0.27
VPS13CQ709C8 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13CQ709C8 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC13.33□□□□□ -0.28
VPS13CQ709C8 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
VPS13CQ709C8 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13CQ709C8 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13CQ709C8 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13CQ709C8 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC13.33□□□□□ -0.28
VPS13CQ709C8 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
VPS13CQ709C8 PFN1P12-201ENST00000455938 534 ntBASIC13.33□□□□□ -0.28
VPS13CQ709C8 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
VPS13CQ709C8 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13CQ709C8 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13CQ709C8 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
VPS13CQ709C8 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13CQ709C8 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13CQ709C8 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC13.33□□□□□ -0.28
VPS13CQ709C8 NF2-208ENST00000403435 2568 ntTSL 5 BASIC13.33□□□□□ -0.28
VPS13CQ709C8 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13CQ709C8 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13CQ709C8 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
VPS13CQ709C8 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13CQ709C8 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13CQ709C8 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13CQ709C8 AL139010.1-201ENST00000454878 894 ntBASIC13.33□□□□□ -0.28
VPS13CQ709C8 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC13.33□□□□□ -0.28
VPS13CQ709C8 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
VPS13CQ709C8 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC13.33□□□□□ -0.28
VPS13CQ709C8 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13CQ709C8 HADH-212ENST00000638621 741 ntTSL 5 BASIC13.33□□□□□ -0.28
VPS13CQ709C8 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
VPS13CQ709C8 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC13.33□□□□□ -0.28
VPS13CQ709C8 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13CQ709C8 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC13.33□□□□□ -0.28
VPS13CQ709C8 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13CQ709C8 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13CQ709C8 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC13.33□□□□□ -0.28
VPS13CQ709C8 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
VPS13CQ709C8 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13CQ709C8 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13CQ709C8 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC13.32□□□□□ -0.28
VPS13CQ709C8 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC13.32□□□□□ -0.28
VPS13CQ709C8 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC13.32□□□□□ -0.28
VPS13CQ709C8 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
VPS13CQ709C8 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC13.32□□□□□ -0.28
VPS13CQ709C8 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC13.32□□□□□ -0.28
VPS13CQ709C8 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
VPS13CQ709C8 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13CQ709C8 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13CQ709C8 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC13.32□□□□□ -0.28
VPS13CQ709C8 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13CQ709C8 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC13.32□□□□□ -0.28
VPS13CQ709C8 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13CQ709C8 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13CQ709C8 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13CQ709C8 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
VPS13CQ709C8 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC13.32□□□□□ -0.28
VPS13CQ709C8 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC13.32□□□□□ -0.28
VPS13CQ709C8 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC13.32□□□□□ -0.28
VPS13CQ709C8 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC13.32□□□□□ -0.28
VPS13CQ709C8 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13CQ709C8 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC13.32□□□□□ -0.28
VPS13CQ709C8 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13CQ709C8 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13CQ709C8 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
VPS13CQ709C8 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13CQ709C8 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13CQ709C8 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC13.32□□□□□ -0.28
VPS13CQ709C8 AC004898.1-201ENST00000451057 766 ntBASIC13.32□□□□□ -0.28
VPS13CQ709C8 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13CQ709C8 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC13.32□□□□□ -0.28
VPS13CQ709C8 PTP4A1P2-201ENST00000546033 454 ntBASIC13.32□□□□□ -0.28
VPS13CQ709C8 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13CQ709C8 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13CQ709C8 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13CQ709C8 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13CQ709C8 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
VPS13CQ709C8 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 66 ms