Protein–RNA interactions for Protein: Q5VTB9

RNF220, E3 ubiquitin-protein ligase RNF220, humanhuman

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF220Q5VTB9 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 AP005117.1-201ENST00000584346 1413 ntBASIC15.78■□□□□ 0.12
RNF220Q5VTB9 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 GID4-202ENST00000376345 1391 ntTSL 3 BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 EMD-201ENST00000369835 966 ntTSL 3 BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 MIR1224-201ENST00000408193 85 ntBASIC15.78■□□□□ 0.12
RNF220Q5VTB9 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 COPE-211ENST00000600932 1144 ntTSL 5 BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 AP001269.4-201ENST00000609611 512 ntBASIC15.78■□□□□ 0.12
RNF220Q5VTB9 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 AC097637.2-201ENST00000624096 1997 ntBASIC15.78■□□□□ 0.12
RNF220Q5VTB9 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
RNF220Q5VTB9 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC15.77■□□□□ 0.12
RNF220Q5VTB9 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
RNF220Q5VTB9 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
RNF220Q5VTB9 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC15.77■□□□□ 0.12
RNF220Q5VTB9 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RNF220Q5VTB9 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
RNF220Q5VTB9 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RNF220Q5VTB9 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RNF220Q5VTB9 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC15.77■□□□□ 0.12
RNF220Q5VTB9 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
RNF220Q5VTB9 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.77■□□□□ 0.12
RNF220Q5VTB9 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RNF220Q5VTB9 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC15.77■□□□□ 0.12
RNF220Q5VTB9 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RNF220Q5VTB9 TUBB8P12-201ENST00000308911 1335 ntBASIC15.77■□□□□ 0.12
RNF220Q5VTB9 TUBB7P-202ENST00000428444 1305 ntBASIC15.77■□□□□ 0.12
RNF220Q5VTB9 TUBB8P7-204ENST00000567960 1332 ntBASIC15.77■□□□□ 0.12
RNF220Q5VTB9 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
RNF220Q5VTB9 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
RNF220Q5VTB9 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
RNF220Q5VTB9 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC15.77■□□□□ 0.12
RNF220Q5VTB9 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
RNF220Q5VTB9 PRYP5-201ENST00000451909 266 ntBASIC15.77■□□□□ 0.12
RNF220Q5VTB9 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC15.77■□□□□ 0.12
RNF220Q5VTB9 AC106795.1-205ENST00000512851 1056 ntBASIC15.77■□□□□ 0.12
RNF220Q5VTB9 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
RNF220Q5VTB9 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC15.77■□□□□ 0.12
RNF220Q5VTB9 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC15.77■□□□□ 0.12
RNF220Q5VTB9 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC15.77■□□□□ 0.12
RNF220Q5VTB9 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC15.77■□□□□ 0.12
RNF220Q5VTB9 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
RNF220Q5VTB9 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
RNF220Q5VTB9 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
RNF220Q5VTB9 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC15.77■□□□□ 0.11
RNF220Q5VTB9 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
RNF220Q5VTB9 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
RNF220Q5VTB9 HARS-204ENST00000438307 1789 ntTSL 2 BASIC15.77■□□□□ 0.11
RNF220Q5VTB9 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.77■□□□□ 0.11
RNF220Q5VTB9 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC15.77■□□□□ 0.11
RNF220Q5VTB9 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
RNF220Q5VTB9 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC15.77■□□□□ 0.11
RNF220Q5VTB9 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
RNF220Q5VTB9 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
RNF220Q5VTB9 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF220Q5VTB9 ACE-203ENST00000413513 2237 ntTSL 2 BASIC15.76■□□□□ 0.11
RNF220Q5VTB9 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC15.76■□□□□ 0.11
RNF220Q5VTB9 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
RNF220Q5VTB9 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF220Q5VTB9 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF220Q5VTB9 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC15.76■□□□□ 0.11
RNF220Q5VTB9 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC15.76■□□□□ 0.11
RNF220Q5VTB9 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC15.76■□□□□ 0.11
RNF220Q5VTB9 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
RNF220Q5VTB9 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC15.76■□□□□ 0.11
RNF220Q5VTB9 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
RNF220Q5VTB9 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC15.76■□□□□ 0.11
RNF220Q5VTB9 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 61.1 ms