Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0.01
RNF4P78317 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
RNF4P78317 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
RNF4P78317 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
RNF4P78317 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
RNF4P78317 AL596257.1-201ENST00000641463 2694 ntBASIC15.08■□□□□ 0
RNF4P78317 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC15.08■□□□□ 0
RNF4P78317 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC15.08■□□□□ 0
RNF4P78317 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC15.08■□□□□ 0
RNF4P78317 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
RNF4P78317 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
RNF4P78317 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC15.08■□□□□ 0
RNF4P78317 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC15.08■□□□□ 0
RNF4P78317 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC15.08■□□□□ 0
RNF4P78317 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC15.08■□□□□ 0
RNF4P78317 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC15.08■□□□□ 0
RNF4P78317 AC125807.1-201ENST00000483097 614 ntBASIC15.08■□□□□ 0
RNF4P78317 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC15.08■□□□□ 0
RNF4P78317 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC15.08■□□□□ 0
RNF4P78317 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC15.08■□□□□ 0
RNF4P78317 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC15.08■□□□□ 0
RNF4P78317 AC007967.4-201ENST00000614700 386 ntBASIC15.08■□□□□ 0
RNF4P78317 AC093512.1-201ENST00000617969 520 ntBASIC15.08■□□□□ 0
RNF4P78317 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
RNF4P78317 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
RNF4P78317 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC15.08■□□□□ 0
RNF4P78317 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC15.08■□□□□ 0
RNF4P78317 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.08■□□□□ 0
RNF4P78317 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
RNF4P78317 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC15.08■□□□□ 0
RNF4P78317 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
RNF4P78317 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC15.08■□□□□ 0
RNF4P78317 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC15.08■□□□□ 0
RNF4P78317 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC15.08■□□□□ 0
RNF4P78317 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC15.08■□□□□ 0
RNF4P78317 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
RNF4P78317 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
RNF4P78317 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
RNF4P78317 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RNF4P78317 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
RNF4P78317 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RNF4P78317 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC15.07■□□□□ 0
RNF4P78317 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC15.07■□□□□ 0
RNF4P78317 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC15.07■□□□□ 0
RNF4P78317 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
RNF4P78317 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC15.07■□□□□ 0
RNF4P78317 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
RNF4P78317 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC15.07■□□□□ 0
RNF4P78317 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RNF4P78317 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.07■□□□□ 0
RNF4P78317 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RNF4P78317 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RNF4P78317 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC15.07■□□□□ 0
RNF4P78317 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RNF4P78317 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC15.07■□□□□ 0
RNF4P78317 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RNF4P78317 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC15.07■□□□□ 0
RNF4P78317 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RNF4P78317 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RNF4P78317 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
RNF4P78317 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
RNF4P78317 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
RNF4P78317 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC15.07■□□□□ 0
RNF4P78317 AC107890.1-201ENST00000422478 521 ntBASIC15.07■□□□□ 0
RNF4P78317 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RNF4P78317 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC15.07■□□□□ 0
RNF4P78317 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC15.07■□□□□ 0
RNF4P78317 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RNF4P78317 PPP6R2P1-201ENST00000450880 1275 ntBASIC15.07■□□□□ 0
RNF4P78317 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC15.07■□□□□ 0
RNF4P78317 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC15.07■□□□□ 0
RNF4P78317 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC15.07■□□□□ 0
RNF4P78317 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC15.07■□□□□ 0
RNF4P78317 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC15.07■□□□□ 0
RNF4P78317 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC15.07■□□□□ 0
RNF4P78317 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC15.07■□□□□ 0
RNF4P78317 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RNF4P78317 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RNF4P78317 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
RNF4P78317 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RNF4P78317 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC15.07■□□□□ 0
RNF4P78317 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC15.07■□□□□ 0
RNF4P78317 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC15.07■□□□□ 0
RNF4P78317 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
RNF4P78317 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC15.07■□□□□ 0
RNF4P78317 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
RNF4P78317 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RNF4P78317 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
RNF4P78317 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
RNF4P78317 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
RNF4P78317 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RNF4P78317 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RNF4P78317 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RNF4P78317 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC15.07■□□□□ 0
RNF4P78317 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC15.07■□□□□ 0
RNF4P78317 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
RNF4P78317 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
RNF4P78317 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
RNF4P78317 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
RNF4P78317 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC15.07■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms