Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
HOXD3P31249 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXD3P31249 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
HOXD3P31249 NKILA-202ENST00000614771 2598 ntBASIC12.63□□□□□ -0.39
HOXD3P31249 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXD3P31249 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC12.63□□□□□ -0.39
HOXD3P31249 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC12.63□□□□□ -0.39
HOXD3P31249 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXD3P31249 AC063926.2-201ENST00000623766 1308 ntBASIC12.62□□□□□ -0.39
HOXD3P31249 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXD3P31249 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC12.62□□□□□ -0.39
HOXD3P31249 LINC01144-201ENST00000626198 1710 ntBASIC12.62□□□□□ -0.39
HOXD3P31249 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXD3P31249 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXD3P31249 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXD3P31249 AGGF1P2-201ENST00000426656 2106 ntBASIC12.62□□□□□ -0.39
HOXD3P31249 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC12.62□□□□□ -0.39
HOXD3P31249 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HOXD3P31249 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXD3P31249 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXD3P31249 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC12.62□□□□□ -0.39
HOXD3P31249 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXD3P31249 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HOXD3P31249 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HOXD3P31249 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
HOXD3P31249 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXD3P31249 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HOXD3P31249 CD81-202ENST00000381036 880 ntTSL 3 BASIC12.62□□□□□ -0.39
HOXD3P31249 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HOXD3P31249 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC12.62□□□□□ -0.39
HOXD3P31249 PP14571-201ENST00000404327 934 ntTSL 2 BASIC12.62□□□□□ -0.39
HOXD3P31249 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC12.62□□□□□ -0.39
HOXD3P31249 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC12.62□□□□□ -0.39
HOXD3P31249 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
HOXD3P31249 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
HOXD3P31249 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC12.62□□□□□ -0.39
HOXD3P31249 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC12.62□□□□□ -0.39
HOXD3P31249 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
HOXD3P31249 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC12.62□□□□□ -0.39
HOXD3P31249 AL158211.3-201ENST00000607385 239 ntBASIC12.62□□□□□ -0.39
HOXD3P31249 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC12.62□□□□□ -0.39
HOXD3P31249 AC084121.4-201ENST00000641598 221 ntBASIC12.62□□□□□ -0.39
HOXD3P31249 AF228730.8-201ENST00000642140 221 ntBASIC12.62□□□□□ -0.39
HOXD3P31249 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXD3P31249 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXD3P31249 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC12.62□□□□□ -0.39
HOXD3P31249 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXD3P31249 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
HOXD3P31249 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
HOXD3P31249 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXD3P31249 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXD3P31249 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
HOXD3P31249 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC12.62□□□□□ -0.39
HOXD3P31249 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC12.62□□□□□ -0.39
HOXD3P31249 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HOXD3P31249 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
HOXD3P31249 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC12.62□□□□□ -0.39
HOXD3P31249 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXD3P31249 PRORSD1P-202ENST00000563365 2154 ntBASIC12.62□□□□□ -0.39
HOXD3P31249 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
HOXD3P31249 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXD3P31249 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXD3P31249 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC12.61□□□□□ -0.39
HOXD3P31249 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXD3P31249 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC12.61□□□□□ -0.39
HOXD3P31249 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXD3P31249 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
HOXD3P31249 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXD3P31249 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HOXD3P31249 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXD3P31249 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXD3P31249 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXD3P31249 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC12.61□□□□□ -0.39
HOXD3P31249 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HOXD3P31249 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXD3P31249 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HOXD3P31249 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
HOXD3P31249 MIR346-201ENST00000362234 95 ntBASIC12.61□□□□□ -0.39
HOXD3P31249 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC12.61□□□□□ -0.39
HOXD3P31249 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HOXD3P31249 GOLGA6L11P-201ENST00000417252 1298 ntBASIC12.61□□□□□ -0.39
HOXD3P31249 AC142381.1-201ENST00000426099 345 ntBASIC12.61□□□□□ -0.39
HOXD3P31249 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC12.61□□□□□ -0.39
HOXD3P31249 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC12.61□□□□□ -0.39
HOXD3P31249 AC005225.4-201ENST00000557330 545 ntBASIC12.61□□□□□ -0.39
HOXD3P31249 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC12.61□□□□□ -0.39
HOXD3P31249 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC12.61□□□□□ -0.39
HOXD3P31249 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXD3P31249 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC12.61□□□□□ -0.39
HOXD3P31249 HFE2-206ENST00000634927 506 ntTSL 4 BASIC12.61□□□□□ -0.39
HOXD3P31249 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXD3P31249 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXD3P31249 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
HOXD3P31249 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC12.61□□□□□ -0.39
HOXD3P31249 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC12.61□□□□□ -0.39
HOXD3P31249 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXD3P31249 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HOXD3P31249 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC12.61□□□□□ -0.39
HOXD3P31249 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HOXD3P31249 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC12.61□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms