Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC18.82■□□□□ 0.6
LIG1P18858 GGTLC5P-201ENST00000617623 998 ntBASIC18.82■□□□□ 0.6
LIG1P18858 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LIG1P18858 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LIG1P18858 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC18.82■□□□□ 0.6
LIG1P18858 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIG1P18858 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC18.82■□□□□ 0.6
LIG1P18858 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC18.82■□□□□ 0.6
LIG1P18858 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC18.82■□□□□ 0.6
LIG1P18858 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LIG1P18858 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIG1P18858 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LIG1P18858 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
LIG1P18858 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC18.81■□□□□ 0.6
LIG1P18858 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIG1P18858 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIG1P18858 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIG1P18858 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIG1P18858 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC18.81■□□□□ 0.6
LIG1P18858 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC18.81■□□□□ 0.6
LIG1P18858 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIG1P18858 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIG1P18858 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
LIG1P18858 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIG1P18858 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
LIG1P18858 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIG1P18858 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LIG1P18858 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
LIG1P18858 AC023274.1-201ENST00000418278 595 ntBASIC18.81■□□□□ 0.6
LIG1P18858 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC18.81■□□□□ 0.6
LIG1P18858 WDR53-204ENST00000433160 887 ntTSL 5 BASIC18.81■□□□□ 0.6
LIG1P18858 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LIG1P18858 KRT18P2-201ENST00000447938 1258 ntBASIC18.81■□□□□ 0.6
LIG1P18858 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC18.81■□□□□ 0.6
LIG1P18858 RIN3-211ENST00000557762 517 ntTSL 3 BASIC18.81■□□□□ 0.6
LIG1P18858 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC18.81■□□□□ 0.6
LIG1P18858 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIG1P18858 AL353732.1-201ENST00000569618 1459 ntBASIC18.81■□□□□ 0.6
LIG1P18858 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LIG1P18858 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIG1P18858 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIG1P18858 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LIG1P18858 NFIC-211ENST00000641145 8399 ntBASIC18.81■□□□□ 0.6
LIG1P18858 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LIG1P18858 AMT-233ENST00000636522 1620 ntTSL 2 BASIC18.81■□□□□ 0.6
LIG1P18858 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIG1P18858 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC18.81■□□□□ 0.6
LIG1P18858 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIG1P18858 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIG1P18858 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LIG1P18858 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LIG1P18858 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIG1P18858 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIG1P18858 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LIG1P18858 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIG1P18858 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LIG1P18858 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIG1P18858 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LIG1P18858 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC18.8■□□□□ 0.6
LIG1P18858 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LIG1P18858 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LIG1P18858 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIG1P18858 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LIG1P18858 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC18.8■□□□□ 0.6
LIG1P18858 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
LIG1P18858 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC18.8■□□□□ 0.6
LIG1P18858 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC18.8■□□□□ 0.6
LIG1P18858 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC18.8■□□□□ 0.6
LIG1P18858 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIG1P18858 FAM197Y3-203ENST00000618346 717 ntBASIC18.8■□□□□ 0.6
LIG1P18858 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIG1P18858 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIG1P18858 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIG1P18858 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIG1P18858 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC18.8■□□□□ 0.6
LIG1P18858 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LIG1P18858 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIG1P18858 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LIG1P18858 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIG1P18858 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LIG1P18858 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIG1P18858 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIG1P18858 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC18.79■□□□□ 0.6
LIG1P18858 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIG1P18858 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
LIG1P18858 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC18.79■□□□□ 0.6
LIG1P18858 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC18.79■□□□□ 0.6
LIG1P18858 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
LIG1P18858 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC18.79■□□□□ 0.6
LIG1P18858 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIG1P18858 AL591424.1-201ENST00000442569 1213 ntBASIC18.79■□□□□ 0.6
LIG1P18858 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC18.79■□□□□ 0.6
LIG1P18858 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC18.79■□□□□ 0.6
LIG1P18858 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
LIG1P18858 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC18.79■□□□□ 0.6
LIG1P18858 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC18.79■□□□□ 0.6
LIG1P18858 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LIG1P18858 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIG1P18858 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LIG1P18858 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms