Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL3A1P02461 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL3A1P02461 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
COL3A1P02461 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC21.22■□□□□ 0.99
COL3A1P02461 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL3A1P02461 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL3A1P02461 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
COL3A1P02461 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
COL3A1P02461 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC21.22■□□□□ 0.99
COL3A1P02461 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
COL3A1P02461 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL3A1P02461 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL3A1P02461 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC21.22■□□□□ 0.99
COL3A1P02461 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
COL3A1P02461 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC21.22■□□□□ 0.99
COL3A1P02461 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL3A1P02461 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL3A1P02461 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
COL3A1P02461 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
COL3A1P02461 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL3A1P02461 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL3A1P02461 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL3A1P02461 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC21.22■□□□□ 0.99
COL3A1P02461 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC21.22■□□□□ 0.99
COL3A1P02461 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL3A1P02461 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL3A1P02461 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC21.21■□□□□ 0.99
COL3A1P02461 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL3A1P02461 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL3A1P02461 GSAP-205ENST00000430584 600 ntTSL 5 BASIC21.21■□□□□ 0.99
COL3A1P02461 PNKD-204ENST00000436005 978 ntTSL 5 BASIC21.21■□□□□ 0.99
COL3A1P02461 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC21.21■□□□□ 0.99
COL3A1P02461 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
COL3A1P02461 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC21.21■□□□□ 0.99
COL3A1P02461 CHCHD2P3-201ENST00000603038 451 ntBASIC21.21■□□□□ 0.99
COL3A1P02461 AC012645.4-201ENST00000610691 1061 ntBASIC21.21■□□□□ 0.99
COL3A1P02461 SRP9-204ENST00000619790 377 ntTSL 2 BASIC21.21■□□□□ 0.99
COL3A1P02461 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC21.21■□□□□ 0.99
COL3A1P02461 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC21.21■□□□□ 0.99
COL3A1P02461 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL3A1P02461 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC21.21■□□□□ 0.99
COL3A1P02461 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
COL3A1P02461 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL3A1P02461 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.21■□□□□ 0.99
COL3A1P02461 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
COL3A1P02461 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
COL3A1P02461 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC21.21■□□□□ 0.99
COL3A1P02461 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL3A1P02461 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC21.21■□□□□ 0.99
COL3A1P02461 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
COL3A1P02461 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
COL3A1P02461 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC21.2■□□□□ 0.98
COL3A1P02461 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC21.2■□□□□ 0.98
COL3A1P02461 TAF8-206ENST00000472818 719 ntTSL 2 BASIC21.2■□□□□ 0.98
COL3A1P02461 AC004233.3-201ENST00000607794 1269 ntBASIC21.2■□□□□ 0.98
COL3A1P02461 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC21.2■□□□□ 0.98
COL3A1P02461 AC007431.3-201ENST00000623221 587 ntBASIC21.2■□□□□ 0.98
COL3A1P02461 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
COL3A1P02461 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC21.2■□□□□ 0.98
COL3A1P02461 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
COL3A1P02461 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC21.2■□□□□ 0.98
COL3A1P02461 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC21.2■□□□□ 0.98
COL3A1P02461 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
COL3A1P02461 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
COL3A1P02461 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL3A1P02461 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL3A1P02461 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
COL3A1P02461 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL3A1P02461 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
COL3A1P02461 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC21.2■□□□□ 0.98
COL3A1P02461 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
COL3A1P02461 COX5BP8-201ENST00000416911 349 ntBASIC21.2■□□□□ 0.98
COL3A1P02461 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC21.2■□□□□ 0.98
COL3A1P02461 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL3A1P02461 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL3A1P02461 COX11-202ENST00000571584 1108 ntTSL 2 BASIC21.2■□□□□ 0.98
COL3A1P02461 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC21.2■□□□□ 0.98
COL3A1P02461 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
COL3A1P02461 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC21.19■□□□□ 0.98
COL3A1P02461 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC21.19■□□□□ 0.98
COL3A1P02461 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC21.19■□□□□ 0.98
COL3A1P02461 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL3A1P02461 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
COL3A1P02461 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC21.19■□□□□ 0.98
COL3A1P02461 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL3A1P02461 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL3A1P02461 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL3A1P02461 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL3A1P02461 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC21.19■□□□□ 0.98
COL3A1P02461 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL3A1P02461 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC21.19■□□□□ 0.98
COL3A1P02461 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
COL3A1P02461 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL3A1P02461 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL3A1P02461 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
COL3A1P02461 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL3A1P02461 RAC2-202ENST00000401529 569 ntTSL 4 BASIC21.19■□□□□ 0.98
COL3A1P02461 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC21.19■□□□□ 0.98
COL3A1P02461 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL3A1P02461 TPRX2P-201ENST00000535362 881 ntBASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms