Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CLPTM1O96005 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLPTM1O96005 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC15.47■□□□□ 0.07
CLPTM1O96005 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC15.47■□□□□ 0.07
CLPTM1O96005 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CLPTM1O96005 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLPTM1O96005 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLPTM1O96005 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLPTM1O96005 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLPTM1O96005 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLPTM1O96005 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLPTM1O96005 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CLPTM1O96005 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLPTM1O96005 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLPTM1O96005 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC15.47■□□□□ 0.07
CLPTM1O96005 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC15.47■□□□□ 0.07
CLPTM1O96005 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CLPTM1O96005 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC15.47■□□□□ 0.07
CLPTM1O96005 RN7SL606P-201ENST00000472779 293 ntBASIC15.47■□□□□ 0.07
CLPTM1O96005 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC15.47■□□□□ 0.07
CLPTM1O96005 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC15.47■□□□□ 0.07
CLPTM1O96005 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC15.47■□□□□ 0.07
CLPTM1O96005 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC15.47■□□□□ 0.07
CLPTM1O96005 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC15.47■□□□□ 0.07
CLPTM1O96005 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
CLPTM1O96005 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLPTM1O96005 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC15.47■□□□□ 0.07
CLPTM1O96005 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLPTM1O96005 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLPTM1O96005 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLPTM1O96005 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
CLPTM1O96005 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLPTM1O96005 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLPTM1O96005 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC15.47■□□□□ 0.07
CLPTM1O96005 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLPTM1O96005 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLPTM1O96005 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLPTM1O96005 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLPTM1O96005 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
CLPTM1O96005 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLPTM1O96005 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
CLPTM1O96005 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CLPTM1O96005 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
CLPTM1O96005 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
CLPTM1O96005 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC15.46■□□□□ 0.07
CLPTM1O96005 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CLPTM1O96005 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLPTM1O96005 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC15.46■□□□□ 0.07
CLPTM1O96005 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC15.46■□□□□ 0.07
CLPTM1O96005 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC15.46■□□□□ 0.07
CLPTM1O96005 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLPTM1O96005 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLPTM1O96005 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
CLPTM1O96005 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLPTM1O96005 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLPTM1O96005 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLPTM1O96005 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC15.46■□□□□ 0.07
CLPTM1O96005 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CLPTM1O96005 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLPTM1O96005 DDT-203ENST00000403754 569 ntTSL 3 BASIC15.46■□□□□ 0.07
CLPTM1O96005 DDT-206ENST00000430101 573 ntTSL 2 BASIC15.46■□□□□ 0.07
CLPTM1O96005 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
CLPTM1O96005 LINC00265-3P-201ENST00000447588 903 ntBASIC15.46■□□□□ 0.07
CLPTM1O96005 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CLPTM1O96005 TPSP2-201ENST00000561760 610 ntBASIC15.46■□□□□ 0.07
CLPTM1O96005 MPI-205ENST00000562606 1052 ntTSL 3 BASIC15.46■□□□□ 0.07
CLPTM1O96005 GXYLT1P4-201ENST00000613576 1192 ntBASIC15.46■□□□□ 0.07
CLPTM1O96005 MYO15B-237ENST00000642007 4893 ntBASIC15.46■□□□□ 0.07
CLPTM1O96005 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLPTM1O96005 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLPTM1O96005 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
CLPTM1O96005 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
CLPTM1O96005 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.06
CLPTM1O96005 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.06
CLPTM1O96005 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CLPTM1O96005 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CLPTM1O96005 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CLPTM1O96005 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC15.45■□□□□ 0.06
CLPTM1O96005 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC15.45■□□□□ 0.06
CLPTM1O96005 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CLPTM1O96005 AC097376.2-205ENST00000610159 5334 ntBASIC15.45■□□□□ 0.06
CLPTM1O96005 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CLPTM1O96005 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLPTM1O96005 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLPTM1O96005 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC15.45■□□□□ 0.06
CLPTM1O96005 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLPTM1O96005 AC016027.1-202ENST00000607927 1699 ntBASIC15.45■□□□□ 0.06
CLPTM1O96005 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLPTM1O96005 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLPTM1O96005 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC15.45■□□□□ 0.06
CLPTM1O96005 PPIH-202ENST00000372549 327 ntTSL 3 BASIC15.45■□□□□ 0.06
CLPTM1O96005 AC026396.1-201ENST00000419388 421 ntBASIC15.45■□□□□ 0.06
CLPTM1O96005 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CLPTM1O96005 TOB2P1-201ENST00000469761 992 ntBASIC15.45■□□□□ 0.06
CLPTM1O96005 AC068472.1-201ENST00000474589 881 ntBASIC15.45■□□□□ 0.06
CLPTM1O96005 KRT18P56-201ENST00000507275 550 ntBASIC15.45■□□□□ 0.06
CLPTM1O96005 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC15.45■□□□□ 0.06
CLPTM1O96005 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CLPTM1O96005 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC15.45■□□□□ 0.06
CLPTM1O96005 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms