Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
UPK1AO00322 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
UPK1AO00322 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC15.47■□□□□ 0.07
UPK1AO00322 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC15.47■□□□□ 0.07
UPK1AO00322 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC15.47■□□□□ 0.07
UPK1AO00322 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
UPK1AO00322 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.47■□□□□ 0.07
UPK1AO00322 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC15.47■□□□□ 0.07
UPK1AO00322 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
UPK1AO00322 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
UPK1AO00322 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
UPK1AO00322 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
UPK1AO00322 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
UPK1AO00322 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
UPK1AO00322 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
UPK1AO00322 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC15.47■□□□□ 0.07
UPK1AO00322 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
UPK1AO00322 NMU-203ENST00000507338 658 ntTSL 3 BASIC15.47■□□□□ 0.07
UPK1AO00322 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC15.47■□□□□ 0.07
UPK1AO00322 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC15.47■□□□□ 0.07
UPK1AO00322 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
UPK1AO00322 AC109635.5-201ENST00000533593 962 ntBASIC15.47■□□□□ 0.07
UPK1AO00322 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
UPK1AO00322 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
UPK1AO00322 AL009183.1-201ENST00000603760 355 ntBASIC15.47■□□□□ 0.07
UPK1AO00322 MED16-214ENST00000617672 554 ntTSL 5 BASIC15.47■□□□□ 0.07
UPK1AO00322 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.47■□□□□ 0.07
UPK1AO00322 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
UPK1AO00322 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
UPK1AO00322 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC15.47■□□□□ 0.07
UPK1AO00322 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC15.47■□□□□ 0.07
UPK1AO00322 LCK-206ENST00000373564 2137 ntTSL 5 BASIC15.47■□□□□ 0.07
UPK1AO00322 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC15.47■□□□□ 0.07
UPK1AO00322 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
UPK1AO00322 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
UPK1AO00322 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC15.47■□□□□ 0.07
UPK1AO00322 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
UPK1AO00322 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC15.47■□□□□ 0.07
UPK1AO00322 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC15.47■□□□□ 0.07
UPK1AO00322 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
UPK1AO00322 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
UPK1AO00322 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
UPK1AO00322 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
UPK1AO00322 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
UPK1AO00322 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
UPK1AO00322 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
UPK1AO00322 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
UPK1AO00322 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
UPK1AO00322 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
UPK1AO00322 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
UPK1AO00322 AC140658.5-201ENST00000438532 169 ntBASIC15.46■□□□□ 0.07
UPK1AO00322 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC15.46■□□□□ 0.07
UPK1AO00322 AL591424.1-201ENST00000442569 1213 ntBASIC15.46■□□□□ 0.07
UPK1AO00322 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
UPK1AO00322 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC15.46■□□□□ 0.07
UPK1AO00322 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC15.46■□□□□ 0.07
UPK1AO00322 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC15.46■□□□□ 0.07
UPK1AO00322 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
UPK1AO00322 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC15.46■□□□□ 0.07
UPK1AO00322 AC140113.2-201ENST00000604370 208 ntBASIC15.46■□□□□ 0.07
UPK1AO00322 AC027601.4-201ENST00000611259 610 ntBASIC15.46■□□□□ 0.07
UPK1AO00322 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC15.46■□□□□ 0.07
UPK1AO00322 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
UPK1AO00322 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC15.46■□□□□ 0.07
UPK1AO00322 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC15.46■□□□□ 0.07
UPK1AO00322 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
UPK1AO00322 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
UPK1AO00322 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
UPK1AO00322 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC15.46■□□□□ 0.07
UPK1AO00322 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
UPK1AO00322 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
UPK1AO00322 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.06
UPK1AO00322 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC15.46■□□□□ 0.06
UPK1AO00322 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
UPK1AO00322 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
UPK1AO00322 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.06
UPK1AO00322 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.06
UPK1AO00322 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
UPK1AO00322 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
UPK1AO00322 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC15.46■□□□□ 0.06
UPK1AO00322 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
UPK1AO00322 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
UPK1AO00322 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
UPK1AO00322 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC15.45■□□□□ 0.06
UPK1AO00322 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
UPK1AO00322 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
UPK1AO00322 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
UPK1AO00322 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC15.45■□□□□ 0.06
UPK1AO00322 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
UPK1AO00322 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC15.45■□□□□ 0.06
UPK1AO00322 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
UPK1AO00322 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
UPK1AO00322 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
UPK1AO00322 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
UPK1AO00322 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC15.45■□□□□ 0.06
UPK1AO00322 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
UPK1AO00322 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC15.45■□□□□ 0.06
UPK1AO00322 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC15.45■□□□□ 0.06
UPK1AO00322 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
UPK1AO00322 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms