Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TMX2-CTNND1H3BSU7 EGFEM1P-202ENST00000431685 1563 ntBASIC16.07■□□□□ 0.16
TMX2-CTNND1H3BSU7 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TMX2-CTNND1H3BSU7 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.07■□□□□ 0.16
TMX2-CTNND1H3BSU7 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TMX2-CTNND1H3BSU7 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TMX2-CTNND1H3BSU7 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.07■□□□□ 0.16
TMX2-CTNND1H3BSU7 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TMX2-CTNND1H3BSU7 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC16.07■□□□□ 0.16
TMX2-CTNND1H3BSU7 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.07■□□□□ 0.16
TMX2-CTNND1H3BSU7 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC16.07■□□□□ 0.16
TMX2-CTNND1H3BSU7 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC16.07■□□□□ 0.16
TMX2-CTNND1H3BSU7 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TMX2-CTNND1H3BSU7 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.07■□□□□ 0.16
TMX2-CTNND1H3BSU7 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TMX2-CTNND1H3BSU7 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TMX2-CTNND1H3BSU7 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TMX2-CTNND1H3BSU7 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 TREML5P-201ENST00000421694 576 ntBASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 AC002472.2-201ENST00000442739 958 ntBASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 AC027307.3-201ENST00000594262 1100 ntBASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 AF228730.6-201ENST00000641497 218 ntBASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 AC084121.3-201ENST00000641716 218 ntBASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 AC105233.6-201ENST00000642093 218 ntBASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC16.06■□□□□ 0.16
TMX2-CTNND1H3BSU7 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 GRAMD4P3-201ENST00000621665 1669 ntBASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 COPE-202ENST00000349893 948 ntTSL 2 BASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 EDF1-203ENST00000371649 790 ntTSL 2 BASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 METTL26-204ENST00000397665 558 ntTSL 2 BASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 WBP2-203ENST00000433525 928 ntTSL 2 BASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 PNKD-204ENST00000436005 978 ntTSL 5 BASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 COX11-202ENST00000571584 1108 ntTSL 2 BASIC16.05■□□□□ 0.16
TMX2-CTNND1H3BSU7 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 71.1 ms