Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 AC004877.2-201ENST00000623941 599 ntBASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC16.57■□□□□ 0.24
TCRBV7S3A2A0A539 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 BCAR1-209ENST00000546196 1340 ntBASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 AC140658.5-201ENST00000438532 169 ntBASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 HS6ST1P1-201ENST00000481504 1234 ntBASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 KRT18P34-201ENST00000488218 1270 ntBASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 AC093909.1-201ENST00000504731 1122 ntBASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 AC034105.1-201ENST00000563488 319 ntBASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
TCRBV7S3A2A0A539 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TCRBV7S3A2A0A539 CICP13-201ENST00000422015 2789 ntBASIC16.55■□□□□ 0.24
TCRBV7S3A2A0A539 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TCRBV7S3A2A0A539 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC16.55■□□□□ 0.24
TCRBV7S3A2A0A539 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC16.55■□□□□ 0.24
TCRBV7S3A2A0A539 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TCRBV7S3A2A0A539 AC104109.2-201ENST00000602919 1418 ntBASIC16.55■□□□□ 0.24
TCRBV7S3A2A0A539 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TCRBV7S3A2A0A539 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TCRBV7S3A2A0A539 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.55■□□□□ 0.24
TCRBV7S3A2A0A539 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
TCRBV7S3A2A0A539 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TCRBV7S3A2A0A539 AC136621.1-201ENST00000624017 2304 ntBASIC16.55■□□□□ 0.24
TCRBV7S3A2A0A539 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms