Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 RPL28-203ENST00000428193 573 ntTSL 2 BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 RPL28-204ENST00000431533 590 ntTSL 2 BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 HNRNPA1P13-201ENST00000510646 963 ntBASIC20.59■□□□□ 0.89
SCN11AQ9UI33 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 MFF-223ENST00000524634 647 ntTSL 2 BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 RPL28-207ENST00000558815 616 ntTSL 2 BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 RPS24-214ENST00000613865 538 ntTSL 5 BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 AC005252.2-201ENST00000624630 1141 ntBASIC20.59■□□□□ 0.89
SCN11AQ9UI33 TP73-209ENST00000603362 1668 ntTSL 5 BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC20.58■□□□□ 0.89
SCN11AQ9UI33 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
SCN11AQ9UI33 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SCN11AQ9UI33 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC20.58■□□□□ 0.89
SCN11AQ9UI33 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SCN11AQ9UI33 MPV17-206ENST00000402722 827 ntTSL 3 BASIC20.58■□□□□ 0.89
SCN11AQ9UI33 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC20.58■□□□□ 0.89
SCN11AQ9UI33 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
SCN11AQ9UI33 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC20.58■□□□□ 0.88
SCN11AQ9UI33 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SCN11AQ9UI33 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
SCN11AQ9UI33 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SCN11AQ9UI33 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC20.57■□□□□ 0.88
SCN11AQ9UI33 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC20.57■□□□□ 0.88
SCN11AQ9UI33 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
SCN11AQ9UI33 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SCN11AQ9UI33 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC20.57■□□□□ 0.88
SCN11AQ9UI33 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SCN11AQ9UI33 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
SCN11AQ9UI33 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SCN11AQ9UI33 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC20.57■□□□□ 0.88
SCN11AQ9UI33 AC106760.1-201ENST00000508690 800 ntBASIC20.57■□□□□ 0.88
SCN11AQ9UI33 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC20.57■□□□□ 0.88
SCN11AQ9UI33 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SCN11AQ9UI33 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SCN11AQ9UI33 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SCN11AQ9UI33 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
SCN11AQ9UI33 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
SCN11AQ9UI33 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
SCN11AQ9UI33 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SCN11AQ9UI33 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SCN11AQ9UI33 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC20.57■□□□□ 0.88
SCN11AQ9UI33 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SCN11AQ9UI33 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SCN11AQ9UI33 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SCN11AQ9UI33 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SCN11AQ9UI33 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
SCN11AQ9UI33 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SCN11AQ9UI33 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SCN11AQ9UI33 MIR648-201ENST00000385046 94 ntBASIC20.57■□□□□ 0.88
SCN11AQ9UI33 USB1-202ENST00000423271 1217 ntTSL 2 BASIC20.57■□□□□ 0.88
SCN11AQ9UI33 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC20.57■□□□□ 0.88
SCN11AQ9UI33 VDAC1P7-201ENST00000462417 847 ntBASIC20.57■□□□□ 0.88
SCN11AQ9UI33 AC022494.1-201ENST00000466044 728 ntBASIC20.57■□□□□ 0.88
SCN11AQ9UI33 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
SCN11AQ9UI33 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC20.57■□□□□ 0.88
SCN11AQ9UI33 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC20.57■□□□□ 0.88
SCN11AQ9UI33 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SCN11AQ9UI33 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SCN11AQ9UI33 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC20.56■□□□□ 0.88
SCN11AQ9UI33 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SCN11AQ9UI33 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC20.56■□□□□ 0.88
SCN11AQ9UI33 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC20.56■□□□□ 0.88
SCN11AQ9UI33 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SCN11AQ9UI33 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SCN11AQ9UI33 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC20.56■□□□□ 0.88
SCN11AQ9UI33 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SCN11AQ9UI33 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
SCN11AQ9UI33 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
SCN11AQ9UI33 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SCN11AQ9UI33 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SCN11AQ9UI33 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SCN11AQ9UI33 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SCN11AQ9UI33 TEX30-203ENST00000376022 828 ntTSL 2 BASIC20.56■□□□□ 0.88
SCN11AQ9UI33 AL133267.1-201ENST00000398220 340 ntBASIC20.56■□□□□ 0.88
SCN11AQ9UI33 BOLA2P3-201ENST00000404566 256 ntBASIC20.56■□□□□ 0.88
SCN11AQ9UI33 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC20.56■□□□□ 0.88
SCN11AQ9UI33 AC134915.1-201ENST00000426461 574 ntBASIC20.56■□□□□ 0.88
SCN11AQ9UI33 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC20.56■□□□□ 0.88
SCN11AQ9UI33 AC012441.1-201ENST00000446669 685 ntBASIC20.56■□□□□ 0.88
SCN11AQ9UI33 TDH-203ENST00000531764 1110 ntBASIC20.56■□□□□ 0.88
SCN11AQ9UI33 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SCN11AQ9UI33 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC20.56■□□□□ 0.88
SCN11AQ9UI33 RPL28-206ENST00000558752 671 ntTSL 3 BASIC20.56■□□□□ 0.88
SCN11AQ9UI33 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SCN11AQ9UI33 AC015910.1-201ENST00000579400 975 ntBASIC20.56■□□□□ 0.88
SCN11AQ9UI33 AC244669.2-201ENST00000612320 853 ntBASIC20.56■□□□□ 0.88
SCN11AQ9UI33 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC20.56■□□□□ 0.88
SCN11AQ9UI33 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SCN11AQ9UI33 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SCN11AQ9UI33 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SCN11AQ9UI33 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SCN11AQ9UI33 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC20.56■□□□□ 0.88
SCN11AQ9UI33 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC20.56■□□□□ 0.88
SCN11AQ9UI33 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
SCN11AQ9UI33 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms