Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 AC073592.4-201ENST00000623827 446 ntBASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 AMT-233ENST00000636522 1620 ntTSL 2 BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CHMP1AQ9HD42 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC14.15□□□□□ -0.15
CHMP1AQ9HD42 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 RMI2-205ENST00000576027 818 ntTSL 2 BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 AL353135.1-201ENST00000606729 504 ntBASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 ME2P1-201ENST00000426028 1970 ntBASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 AL590787.1-201ENST00000568856 1315 ntBASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CHMP1AQ9HD42 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 ISCU-203ENST00000431221 799 ntTSL 2 BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 KRT16P4-201ENST00000453883 522 ntBASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 MIR3180-1-201ENST00000580374 94 ntBASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 MIR3180-3-201ENST00000584616 94 ntBASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 AL022326.1-202ENST00000641533 845 ntBASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC14.13□□□□□ -0.15
CHMP1AQ9HD42 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms