Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 FOXO1B-201ENST00000504678 1527 ntBASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TRIM39Q9HCM9 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 TSPY26P-202ENST00000565928 3884 ntBASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 AC109322.1-201ENST00000524499 1264 ntBASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 AL512356.2-201ENST00000546955 174 ntBASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
TRIM39Q9HCM9 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC16.21■□□□□ 0.18
TRIM39Q9HCM9 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
TRIM39Q9HCM9 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.21■□□□□ 0.18
TRIM39Q9HCM9 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.21■□□□□ 0.18
TRIM39Q9HCM9 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 PMS2P2-201ENST00000425039 1128 ntBASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 GATD1-206ENST00000526325 756 ntTSL 5 BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 AC026150.2-201ENST00000564693 1156 ntBASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 RAB34-224ENST00000636513 888 ntTSL 5 BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC16.2■□□□□ 0.18
TRIM39Q9HCM9 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 AL589702.1-201ENST00000641229 1509 ntBASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms