Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AC092384.3-202ENST00000564646 2873 ntBASIC16.87■□□□□ 0.29
PCDH9Q9HC56 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.87■□□□□ 0.29
PCDH9Q9HC56 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
PCDH9Q9HC56 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC16.87■□□□□ 0.29
PCDH9Q9HC56 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PCDH9Q9HC56 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
PCDH9Q9HC56 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PCDH9Q9HC56 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PCDH9Q9HC56 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PCDH9Q9HC56 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PCDH9Q9HC56 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PCDH9Q9HC56 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PCDH9Q9HC56 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
PCDH9Q9HC56 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PCDH9Q9HC56 FABP5-202ENST00000396359 986 ntTSL 5 BASIC16.87■□□□□ 0.29
PCDH9Q9HC56 AC023274.1-201ENST00000418278 595 ntBASIC16.87■□□□□ 0.29
PCDH9Q9HC56 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC16.87■□□□□ 0.29
PCDH9Q9HC56 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC16.87■□□□□ 0.29
PCDH9Q9HC56 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC16.87■□□□□ 0.29
PCDH9Q9HC56 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PCDH9Q9HC56 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.87■□□□□ 0.29
PCDH9Q9HC56 AL031055.1-201ENST00000606362 631 ntBASIC16.87■□□□□ 0.29
PCDH9Q9HC56 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC16.87■□□□□ 0.29
PCDH9Q9HC56 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.87■□□□□ 0.29
PCDH9Q9HC56 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.87■□□□□ 0.29
PCDH9Q9HC56 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PCDH9Q9HC56 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PCDH9Q9HC56 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC16.87■□□□□ 0.29
PCDH9Q9HC56 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PCDH9Q9HC56 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
PCDH9Q9HC56 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC16.87■□□□□ 0.29
PCDH9Q9HC56 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PCDH9Q9HC56 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.87■□□□□ 0.29
PCDH9Q9HC56 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PCDH9Q9HC56 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC16.87■□□□□ 0.29
PCDH9Q9HC56 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PCDH9Q9HC56 AC104640.1-201ENST00000562617 2109 ntBASIC16.87■□□□□ 0.29
PCDH9Q9HC56 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
PCDH9Q9HC56 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 U82695.1-201ENST00000635752 1889 ntBASIC16.86■□□□□ 0.29
PCDH9Q9HC56 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 IMP4-203ENST00000409935 958 ntTSL 5 BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 AC074386.1-202ENST00000463561 864 ntBASIC16.86■□□□□ 0.29
PCDH9Q9HC56 NMU-203ENST00000507338 658 ntTSL 3 BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 WDR88-203ENST00000592765 651 ntTSL 5 BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC16.86■□□□□ 0.29
PCDH9Q9HC56 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
PCDH9Q9HC56 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PCDH9Q9HC56 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
PCDH9Q9HC56 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
PCDH9Q9HC56 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
PCDH9Q9HC56 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PCDH9Q9HC56 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
PCDH9Q9HC56 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
PCDH9Q9HC56 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PCDH9Q9HC56 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.85■□□□□ 0.29
PCDH9Q9HC56 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16.85■□□□□ 0.29
PCDH9Q9HC56 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
PCDH9Q9HC56 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PCDH9Q9HC56 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC16.85■□□□□ 0.29
PCDH9Q9HC56 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms