Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRAIPQ9BWF2 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 MAX-210ENST00000555419 765 ntTSL 5 BASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 RN7SL828P-201ENST00000607615 303 ntBASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 NFIC-211ENST00000641145 8399 ntBASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
TRAIPQ9BWF2 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 COPE-202ENST00000349893 948 ntTSL 2 BASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 AC009477.1-201ENST00000452936 217 ntBASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 COQ6-210ENST00000554920 649 ntTSL 3 BASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 MPI-209ENST00000564003 1195 ntTSL 2 BASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 GPAA1P2-202ENST00000606848 1787 ntBASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 AL133215.2-201ENST00000609242 977 ntBASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 RAB34-223ENST00000636154 730 ntTSL 2 BASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 DOC2GP-204ENST00000639052 2548 ntBASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRAIPQ9BWF2 RNF216P1-203ENST00000404404 2427 ntBASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 AC078925.2-201ENST00000624013 1973 ntBASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 AC022144.1-201ENST00000602255 1580 ntBASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 AC087499.5-201ENST00000452760 1342 ntBASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms