Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC14□□□□□ -0.17
COL12A1Q99715 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC14□□□□□ -0.17
COL12A1Q99715 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL12A1Q99715 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL12A1Q99715 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC14□□□□□ -0.17
COL12A1Q99715 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC14□□□□□ -0.17
COL12A1Q99715 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL12A1Q99715 PARVG-202ENST00000415224 999 ntTSL 2 BASIC14□□□□□ -0.17
COL12A1Q99715 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC14□□□□□ -0.17
COL12A1Q99715 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC14□□□□□ -0.17
COL12A1Q99715 DGAT2L7P-201ENST00000602462 744 ntBASIC14□□□□□ -0.17
COL12A1Q99715 AL645939.5-201ENST00000606834 243 ntBASIC14□□□□□ -0.17
COL12A1Q99715 AC011491.1-203ENST00000637688 543 ntBASIC14□□□□□ -0.17
COL12A1Q99715 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC14□□□□□ -0.17
COL12A1Q99715 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL12A1Q99715 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC14□□□□□ -0.17
COL12A1Q99715 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC14□□□□□ -0.17
COL12A1Q99715 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC14□□□□□ -0.17
COL12A1Q99715 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
COL12A1Q99715 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL12A1Q99715 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC14□□□□□ -0.17
COL12A1Q99715 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC14□□□□□ -0.17
COL12A1Q99715 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL12A1Q99715 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL12A1Q99715 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC14□□□□□ -0.17
COL12A1Q99715 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
COL12A1Q99715 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC14□□□□□ -0.17
COL12A1Q99715 SNX33P1-201ENST00000592116 1762 ntBASIC14□□□□□ -0.17
COL12A1Q99715 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL12A1Q99715 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL12A1Q99715 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC14□□□□□ -0.17
COL12A1Q99715 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL12A1Q99715 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC14□□□□□ -0.17
COL12A1Q99715 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
COL12A1Q99715 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
COL12A1Q99715 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
COL12A1Q99715 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC14□□□□□ -0.17
COL12A1Q99715 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC14□□□□□ -0.17
COL12A1Q99715 BOC-212ENST00000485230 2173 ntTSL 2 BASIC14□□□□□ -0.17
COL12A1Q99715 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL12A1Q99715 CYP51A1P3-201ENST00000400072 1428 ntBASIC14□□□□□ -0.17
COL12A1Q99715 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
COL12A1Q99715 AC018695.7-201ENST00000624587 2492 ntBASIC14□□□□□ -0.17
COL12A1Q99715 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
COL12A1Q99715 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC14□□□□□ -0.17
COL12A1Q99715 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC14□□□□□ -0.17
COL12A1Q99715 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
COL12A1Q99715 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
COL12A1Q99715 AC015818.8-201ENST00000587907 1519 ntBASIC13.99□□□□□ -0.17
COL12A1Q99715 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC13.99□□□□□ -0.17
COL12A1Q99715 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL12A1Q99715 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
COL12A1Q99715 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL12A1Q99715 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC13.99□□□□□ -0.17
COL12A1Q99715 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC13.99□□□□□ -0.17
COL12A1Q99715 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC13.99□□□□□ -0.17
COL12A1Q99715 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC13.99□□□□□ -0.17
COL12A1Q99715 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL12A1Q99715 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
COL12A1Q99715 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL12A1Q99715 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC13.99□□□□□ -0.17
COL12A1Q99715 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL12A1Q99715 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC13.99□□□□□ -0.17
COL12A1Q99715 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL12A1Q99715 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL12A1Q99715 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC13.99□□□□□ -0.17
COL12A1Q99715 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL12A1Q99715 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL12A1Q99715 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC13.99□□□□□ -0.17
COL12A1Q99715 NAT9-222ENST00000583476 583 ntTSL 3 BASIC13.99□□□□□ -0.17
COL12A1Q99715 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL12A1Q99715 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL12A1Q99715 AL354751.1-201ENST00000412768 1863 ntBASIC13.99□□□□□ -0.17
COL12A1Q99715 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL12A1Q99715 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
COL12A1Q99715 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL12A1Q99715 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL12A1Q99715 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL12A1Q99715 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL12A1Q99715 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL12A1Q99715 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL12A1Q99715 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC13.99□□□□□ -0.17
COL12A1Q99715 FAM86LP-201ENST00000478302 853 ntBASIC13.99□□□□□ -0.17
COL12A1Q99715 COX5BP1-201ENST00000507622 393 ntBASIC13.99□□□□□ -0.17
COL12A1Q99715 WT1-AS_6.1-201ENST00000614919 121 ntBASIC13.99□□□□□ -0.17
COL12A1Q99715 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL12A1Q99715 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
COL12A1Q99715 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL12A1Q99715 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL12A1Q99715 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC13.98□□□□□ -0.17
COL12A1Q99715 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC13.98□□□□□ -0.17
COL12A1Q99715 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL12A1Q99715 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL12A1Q99715 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
COL12A1Q99715 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL12A1Q99715 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
COL12A1Q99715 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC13.98□□□□□ -0.17
COL12A1Q99715 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC13.98□□□□□ -0.17
COL12A1Q99715 AC090164.3-201ENST00000610780 2143 ntBASIC13.98□□□□□ -0.17
COL12A1Q99715 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 69.2 ms