Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC26.39■■□□□ 1.81
IFT140Q96RY7 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC26.39■■□□□ 1.81
IFT140Q96RY7 TP73-209ENST00000603362 1668 ntTSL 5 BASIC26.39■■□□□ 1.81
IFT140Q96RY7 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
IFT140Q96RY7 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC26.38■■□□□ 1.81
IFT140Q96RY7 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
IFT140Q96RY7 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
IFT140Q96RY7 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
IFT140Q96RY7 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC26.38■■□□□ 1.81
IFT140Q96RY7 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
IFT140Q96RY7 ACTBP8-201ENST00000403258 1108 ntBASIC26.38■■□□□ 1.81
IFT140Q96RY7 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC26.38■■□□□ 1.81
IFT140Q96RY7 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC26.38■■□□□ 1.81
IFT140Q96RY7 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC26.38■■□□□ 1.81
IFT140Q96RY7 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC26.38■■□□□ 1.81
IFT140Q96RY7 RN7SL555P-201ENST00000584742 339 ntBASIC26.38■■□□□ 1.81
IFT140Q96RY7 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
IFT140Q96RY7 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
IFT140Q96RY7 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
IFT140Q96RY7 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
IFT140Q96RY7 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
IFT140Q96RY7 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
IFT140Q96RY7 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC26.37■■□□□ 1.81
IFT140Q96RY7 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC26.37■■□□□ 1.81
IFT140Q96RY7 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
IFT140Q96RY7 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
IFT140Q96RY7 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC26.37■■□□□ 1.81
IFT140Q96RY7 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
IFT140Q96RY7 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC26.37■■□□□ 1.81
IFT140Q96RY7 AL133466.1-201ENST00000447582 150 ntBASIC26.37■■□□□ 1.81
IFT140Q96RY7 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC26.37■■□□□ 1.81
IFT140Q96RY7 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
IFT140Q96RY7 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC26.37■■□□□ 1.81
IFT140Q96RY7 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
IFT140Q96RY7 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
IFT140Q96RY7 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC26.37■■□□□ 1.81
IFT140Q96RY7 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
IFT140Q96RY7 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC26.37■■□□□ 1.81
IFT140Q96RY7 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
IFT140Q96RY7 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC26.37■■□□□ 1.81
IFT140Q96RY7 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
IFT140Q96RY7 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC26.37■■□□□ 1.81
IFT140Q96RY7 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC26.37■■□□□ 1.81
IFT140Q96RY7 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC26.37■■□□□ 1.81
IFT140Q96RY7 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
IFT140Q96RY7 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
IFT140Q96RY7 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC26.37■■□□□ 1.81
IFT140Q96RY7 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
IFT140Q96RY7 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
IFT140Q96RY7 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
IFT140Q96RY7 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC26.36■■□□□ 1.81
IFT140Q96RY7 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
IFT140Q96RY7 ATP6V0CP2-201ENST00000469409 207 ntBASIC26.36■■□□□ 1.81
IFT140Q96RY7 SUPT4H1P2-201ENST00000501248 353 ntBASIC26.36■■□□□ 1.81
IFT140Q96RY7 COX5BP1-201ENST00000507622 393 ntBASIC26.36■■□□□ 1.81
IFT140Q96RY7 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC26.36■■□□□ 1.81
IFT140Q96RY7 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC26.36■■□□□ 1.81
IFT140Q96RY7 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC26.36■■□□□ 1.81
IFT140Q96RY7 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC26.36■■□□□ 1.81
IFT140Q96RY7 AC026740.1-201ENST00000607068 791 ntBASIC26.36■■□□□ 1.81
IFT140Q96RY7 AP000346.4-201ENST00000614827 381 ntBASIC26.36■■□□□ 1.81
IFT140Q96RY7 ETV2-208ENST00000621247 941 ntTSL 5 BASIC26.36■■□□□ 1.81
IFT140Q96RY7 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC26.36■■□□□ 1.81
IFT140Q96RY7 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
IFT140Q96RY7 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC26.36■■□□□ 1.81
IFT140Q96RY7 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC26.36■■□□□ 1.81
IFT140Q96RY7 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC26.36■■□□□ 1.81
IFT140Q96RY7 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC26.36■■□□□ 1.81
IFT140Q96RY7 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC26.36■■□□□ 1.81
IFT140Q96RY7 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC26.36■■□□□ 1.81
IFT140Q96RY7 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC26.36■■□□□ 1.81
IFT140Q96RY7 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
IFT140Q96RY7 AC069218.1-201ENST00000435269 762 ntBASIC26.36■■□□□ 1.81
IFT140Q96RY7 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
IFT140Q96RY7 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
IFT140Q96RY7 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC26.36■■□□□ 1.81
IFT140Q96RY7 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC26.36■■□□□ 1.81
IFT140Q96RY7 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC26.36■■□□□ 1.81
IFT140Q96RY7 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC26.36■■□□□ 1.81
IFT140Q96RY7 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC26.35■■□□□ 1.81
IFT140Q96RY7 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
IFT140Q96RY7 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
IFT140Q96RY7 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC26.35■■□□□ 1.81
IFT140Q96RY7 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC26.35■■□□□ 1.81
IFT140Q96RY7 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
IFT140Q96RY7 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC26.35■■□□□ 1.81
IFT140Q96RY7 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
IFT140Q96RY7 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
IFT140Q96RY7 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
IFT140Q96RY7 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC26.35■■□□□ 1.81
IFT140Q96RY7 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC26.35■■□□□ 1.81
IFT140Q96RY7 EEF1DP6-201ENST00000449232 372 ntBASIC26.35■■□□□ 1.81
IFT140Q96RY7 AC104784.1-201ENST00000473096 294 ntBASIC26.35■■□□□ 1.81
IFT140Q96RY7 AC022217.1-201ENST00000521069 738 ntBASIC26.35■■□□□ 1.81
IFT140Q96RY7 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC26.35■■□□□ 1.81
IFT140Q96RY7 IQSEC3P1-201ENST00000538799 536 ntBASIC26.35■■□□□ 1.81
IFT140Q96RY7 AL133499.1-201ENST00000596207 608 ntBASIC26.35■■□□□ 1.81
IFT140Q96RY7 AL645939.5-201ENST00000606834 243 ntBASIC26.35■■□□□ 1.81
IFT140Q96RY7 DIO1-215ENST00000610607 796 ntTSL 5 BASIC26.35■■□□□ 1.81
IFT140Q96RY7 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC26.35■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms