Protein–RNA interactions for Protein: Q96PZ7

CSMD1, CUB and sushi domain-containing protein 1, humanhuman

Predictions only

Length 3,565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1Q96PZ7 AC074044.1-201ENST00000609673 707 ntBASIC13.69□□□□□ -0.22
CSMD1Q96PZ7 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC13.69□□□□□ -0.22
CSMD1Q96PZ7 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CSMD1Q96PZ7 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CSMD1Q96PZ7 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC13.69□□□□□ -0.22
CSMD1Q96PZ7 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CSMD1Q96PZ7 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CSMD1Q96PZ7 KRT8P37-201ENST00000451609 1420 ntBASIC13.69□□□□□ -0.22
CSMD1Q96PZ7 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CSMD1Q96PZ7 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
CSMD1Q96PZ7 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC13.69□□□□□ -0.22
CSMD1Q96PZ7 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CSMD1Q96PZ7 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
CSMD1Q96PZ7 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CSMD1Q96PZ7 APOA1-205ENST00000375329 927 ntTSL 2 BASIC13.69□□□□□ -0.22
CSMD1Q96PZ7 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CSMD1Q96PZ7 AP001505.2-201ENST00000616815 443 ntBASIC13.69□□□□□ -0.22
CSMD1Q96PZ7 GATB-213ENST00000515812 1893 ntTSL 5 BASIC13.69□□□□□ -0.22
CSMD1Q96PZ7 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CSMD1Q96PZ7 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
CSMD1Q96PZ7 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CSMD1Q96PZ7 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CSMD1Q96PZ7 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CSMD1Q96PZ7 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CSMD1Q96PZ7 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC13.69□□□□□ -0.22
CSMD1Q96PZ7 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CSMD1Q96PZ7 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CSMD1Q96PZ7 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC13.69□□□□□ -0.22
CSMD1Q96PZ7 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CSMD1Q96PZ7 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 UFM1-202ENST00000379649 846 ntTSL 4 BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 DEK-201ENST00000244776 1441 ntTSL 2 BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 NAA38-207ENST00000576861 556 ntTSL 3 BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CSMD1Q96PZ7 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CSMD1Q96PZ7 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC13.67□□□□□ -0.22
CSMD1Q96PZ7 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC13.67□□□□□ -0.22
CSMD1Q96PZ7 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CSMD1Q96PZ7 SOCS2P1-201ENST00000417727 557 ntBASIC13.67□□□□□ -0.22
CSMD1Q96PZ7 HARS-202ENST00000415192 1401 ntTSL 2 BASIC13.67□□□□□ -0.22
CSMD1Q96PZ7 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC13.67□□□□□ -0.22
CSMD1Q96PZ7 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CSMD1Q96PZ7 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CSMD1Q96PZ7 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CSMD1Q96PZ7 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CSMD1Q96PZ7 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC13.67□□□□□ -0.22
CSMD1Q96PZ7 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC13.67□□□□□ -0.22
CSMD1Q96PZ7 SCARNA20.5-201ENST00000516991 142 ntBASIC13.67□□□□□ -0.22
CSMD1Q96PZ7 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC13.67□□□□□ -0.22
CSMD1Q96PZ7 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CSMD1Q96PZ7 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
CSMD1Q96PZ7 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CSMD1Q96PZ7 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CSMD1Q96PZ7 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CSMD1Q96PZ7 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CSMD1Q96PZ7 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC13.67□□□□□ -0.22
CSMD1Q96PZ7 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CSMD1Q96PZ7 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CSMD1Q96PZ7 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
CSMD1Q96PZ7 HNRNPA1P32-201ENST00000396326 963 ntBASIC13.67□□□□□ -0.22
CSMD1Q96PZ7 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC13.67□□□□□ -0.22
CSMD1Q96PZ7 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CSMD1Q96PZ7 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC13.67□□□□□ -0.22
CSMD1Q96PZ7 ENPP7P5-201ENST00000541031 1031 ntBASIC13.67□□□□□ -0.22
CSMD1Q96PZ7 AC124283.3-201ENST00000570869 594 ntBASIC13.67□□□□□ -0.22
CSMD1Q96PZ7 AL136301.1-201ENST00000615830 422 ntBASIC13.67□□□□□ -0.22
CSMD1Q96PZ7 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
CSMD1Q96PZ7 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms