Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC42Q96M95 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
CCDC42Q96M95 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC42Q96M95 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC42Q96M95 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC42Q96M95 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC42Q96M95 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC42Q96M95 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC42Q96M95 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
CCDC42Q96M95 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC42Q96M95 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC42Q96M95 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC42Q96M95 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC42Q96M95 AKR1C7P-201ENST00000305623 895 ntBASIC17.65■□□□□ 0.42
CCDC42Q96M95 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC42Q96M95 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC42Q96M95 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC42Q96M95 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC42Q96M95 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC42Q96M95 UPK3BP1-201ENST00000428678 509 ntBASIC17.65■□□□□ 0.42
CCDC42Q96M95 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC42Q96M95 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC42Q96M95 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.65■□□□□ 0.42
CCDC42Q96M95 OR7E14P-202ENST00000530490 1290 ntBASIC17.65■□□□□ 0.42
CCDC42Q96M95 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC42Q96M95 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC42Q96M95 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC17.65■□□□□ 0.42
CCDC42Q96M95 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC42Q96M95 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC42Q96M95 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CCDC42Q96M95 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC42Q96M95 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC42Q96M95 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CCDC42Q96M95 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC42Q96M95 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC42Q96M95 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC42Q96M95 AC068418.2-201ENST00000577309 3703 ntBASIC17.65■□□□□ 0.42
CCDC42Q96M95 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC42Q96M95 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC42Q96M95 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC17.65■□□□□ 0.42
CCDC42Q96M95 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
CCDC42Q96M95 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
CCDC42Q96M95 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
CCDC42Q96M95 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC17.64■□□□□ 0.42
CCDC42Q96M95 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC42Q96M95 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC42Q96M95 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC42Q96M95 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC42Q96M95 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC17.64■□□□□ 0.41
CCDC42Q96M95 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC17.64■□□□□ 0.41
CCDC42Q96M95 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC17.64■□□□□ 0.41
CCDC42Q96M95 RPS2P1-201ENST00000434010 821 ntBASIC17.64■□□□□ 0.41
CCDC42Q96M95 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
CCDC42Q96M95 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC42Q96M95 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC42Q96M95 MTRF1LP2-201ENST00000506027 1122 ntBASIC17.64■□□□□ 0.41
CCDC42Q96M95 IGHV3-65-201ENST00000523210 341 ntBASIC17.64■□□□□ 0.41
CCDC42Q96M95 AF238378.1-201ENST00000526806 358 ntBASIC17.64■□□□□ 0.41
CCDC42Q96M95 AL160237.2-201ENST00000556165 472 ntBASIC17.64■□□□□ 0.41
CCDC42Q96M95 RIN3-211ENST00000557762 517 ntTSL 3 BASIC17.64■□□□□ 0.41
CCDC42Q96M95 ETFA-208ENST00000559602 792 ntTSL 3 BASIC17.64■□□□□ 0.41
CCDC42Q96M95 PRELID1P1-202ENST00000567272 903 ntBASIC17.64■□□□□ 0.41
CCDC42Q96M95 PRR29-207ENST00000580752 458 ntTSL 3 BASIC17.64■□□□□ 0.41
CCDC42Q96M95 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.64■□□□□ 0.41
CCDC42Q96M95 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
CCDC42Q96M95 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
CCDC42Q96M95 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC42Q96M95 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC42Q96M95 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC42Q96M95 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC42Q96M95 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
CCDC42Q96M95 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC42Q96M95 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC42Q96M95 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC42Q96M95 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC42Q96M95 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC42Q96M95 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC42Q96M95 AC013268.4-201ENST00000637413 2228 ntBASIC17.63■□□□□ 0.41
CCDC42Q96M95 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC42Q96M95 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC42Q96M95 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC17.63■□□□□ 0.41
CCDC42Q96M95 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
CCDC42Q96M95 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC42Q96M95 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC42Q96M95 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
CCDC42Q96M95 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC17.63■□□□□ 0.41
CCDC42Q96M95 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC17.63■□□□□ 0.41
CCDC42Q96M95 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
CCDC42Q96M95 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC17.63■□□□□ 0.41
CCDC42Q96M95 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC17.63■□□□□ 0.41
CCDC42Q96M95 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC17.63■□□□□ 0.41
CCDC42Q96M95 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC17.63■□□□□ 0.41
CCDC42Q96M95 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC17.63■□□□□ 0.41
CCDC42Q96M95 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC42Q96M95 CYB561-216ENST00000582297 897 ntTSL 3 BASIC17.63■□□□□ 0.41
CCDC42Q96M95 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC42Q96M95 MIR1199-201ENST00000621445 119 ntBASIC17.63■□□□□ 0.41
CCDC42Q96M95 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC42Q96M95 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC17.63■□□□□ 0.41
CCDC42Q96M95 AC016027.1-202ENST00000607927 1699 ntBASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms