Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TTC28Q96AY4 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC16.19■□□□□ 0.18
TTC28Q96AY4 AC116562.4-201ENST00000641316 2276 ntBASIC16.19■□□□□ 0.18
TTC28Q96AY4 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TTC28Q96AY4 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
TTC28Q96AY4 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.19■□□□□ 0.18
TTC28Q96AY4 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TTC28Q96AY4 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TTC28Q96AY4 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TTC28Q96AY4 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TTC28Q96AY4 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TTC28Q96AY4 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC16.19■□□□□ 0.18
TTC28Q96AY4 AC012362.1-201ENST00000434906 739 ntBASIC16.19■□□□□ 0.18
TTC28Q96AY4 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC16.19■□□□□ 0.18
TTC28Q96AY4 AL353637.1-201ENST00000451571 732 ntBASIC16.19■□□□□ 0.18
TTC28Q96AY4 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TTC28Q96AY4 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC16.19■□□□□ 0.18
TTC28Q96AY4 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC16.19■□□□□ 0.18
TTC28Q96AY4 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
TTC28Q96AY4 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC16.18■□□□□ 0.18
TTC28Q96AY4 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TTC28Q96AY4 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TTC28Q96AY4 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TTC28Q96AY4 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
TTC28Q96AY4 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TTC28Q96AY4 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
TTC28Q96AY4 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC16.18■□□□□ 0.18
TTC28Q96AY4 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC16.18■□□□□ 0.18
TTC28Q96AY4 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TTC28Q96AY4 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TTC28Q96AY4 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TTC28Q96AY4 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC16.18■□□□□ 0.18
TTC28Q96AY4 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC16.18■□□□□ 0.18
TTC28Q96AY4 HNRNPA1P63-201ENST00000427917 963 ntBASIC16.18■□□□□ 0.18
TTC28Q96AY4 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
TTC28Q96AY4 MME-218ENST00000625667 363 ntTSL 5 BASIC16.18■□□□□ 0.18
TTC28Q96AY4 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC16.18■□□□□ 0.18
TTC28Q96AY4 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC16.18■□□□□ 0.18
TTC28Q96AY4 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
TTC28Q96AY4 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TTC28Q96AY4 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.18■□□□□ 0.18
TTC28Q96AY4 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TTC28Q96AY4 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TTC28Q96AY4 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.18■□□□□ 0.18
TTC28Q96AY4 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TTC28Q96AY4 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TTC28Q96AY4 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.18■□□□□ 0.18
TTC28Q96AY4 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
TTC28Q96AY4 AC026410.1-201ENST00000507366 1101 ntBASIC16.18■□□□□ 0.18
TTC28Q96AY4 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
TTC28Q96AY4 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC16.18■□□□□ 0.18
TTC28Q96AY4 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
TTC28Q96AY4 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TTC28Q96AY4 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TTC28Q96AY4 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
TTC28Q96AY4 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC16.18■□□□□ 0.18
TTC28Q96AY4 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TTC28Q96AY4 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
TTC28Q96AY4 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TTC28Q96AY4 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC16.17■□□□□ 0.18
TTC28Q96AY4 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TTC28Q96AY4 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC16.17■□□□□ 0.18
TTC28Q96AY4 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TTC28Q96AY4 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TTC28Q96AY4 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TTC28Q96AY4 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC16.17■□□□□ 0.18
TTC28Q96AY4 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TTC28Q96AY4 CTSL-202ENST00000342020 933 ntTSL 2 BASIC16.17■□□□□ 0.18
TTC28Q96AY4 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC16.17■□□□□ 0.18
TTC28Q96AY4 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC16.17■□□□□ 0.18
TTC28Q96AY4 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC16.17■□□□□ 0.18
TTC28Q96AY4 AC093813.1-201ENST00000605066 256 ntBASIC16.17■□□□□ 0.18
TTC28Q96AY4 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC16.17■□□□□ 0.18
TTC28Q96AY4 AC242376.2-201ENST00000619355 883 ntBASIC16.17■□□□□ 0.18
TTC28Q96AY4 DDX5-235ENST00000630471 473 ntTSL 4 BASIC16.17■□□□□ 0.18
TTC28Q96AY4 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
TTC28Q96AY4 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TTC28Q96AY4 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.17■□□□□ 0.18
TTC28Q96AY4 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TTC28Q96AY4 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TTC28Q96AY4 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TTC28Q96AY4 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TTC28Q96AY4 AC007787.1-201ENST00000588095 1583 ntBASIC16.17■□□□□ 0.18
TTC28Q96AY4 RELA-227ENST00000615805 2236 ntTSL 5 BASIC16.17■□□□□ 0.18
TTC28Q96AY4 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.17■□□□□ 0.18
TTC28Q96AY4 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TTC28Q96AY4 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TTC28Q96AY4 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
TTC28Q96AY4 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
TTC28Q96AY4 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC16.17■□□□□ 0.18
TTC28Q96AY4 RAC2-202ENST00000401529 569 ntTSL 4 BASIC16.17■□□□□ 0.18
TTC28Q96AY4 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TTC28Q96AY4 BRI3P1-201ENST00000440440 378 ntBASIC16.17■□□□□ 0.18
TTC28Q96AY4 CNN2P10-201ENST00000443067 918 ntBASIC16.17■□□□□ 0.18
TTC28Q96AY4 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC16.17■□□□□ 0.18
TTC28Q96AY4 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC16.17■□□□□ 0.18
TTC28Q96AY4 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
TTC28Q96AY4 MIR4649-201ENST00000582839 64 ntBASIC16.17■□□□□ 0.18
TTC28Q96AY4 AC006158.1-201ENST00000610661 249 ntBASIC16.17■□□□□ 0.18
TTC28Q96AY4 AL355312.1-201ENST00000407115 2176 ntBASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms