Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 AC097637.2-201ENST00000624096 1997 ntBASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
ZNF540Q8NDQ6 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 HARS-203ENST00000431330 1774 ntTSL 2 BASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 AC006277.1-201ENST00000624348 1610 ntBASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 AC125634.1-201ENST00000438758 1403 ntBASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 AC003669.1-201ENST00000334569 611 ntBASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 FAM220CP-201ENST00000395253 831 ntBASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 AL591684.3-201ENST00000605187 298 ntBASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 REXO1L6P-202ENST00000619970 1078 ntBASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ZNF540Q8NDQ6 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC15.21■□□□□ 0.02
ZNF540Q8NDQ6 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
ZNF540Q8NDQ6 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
ZNF540Q8NDQ6 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
ZNF540Q8NDQ6 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
ZNF540Q8NDQ6 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
ZNF540Q8NDQ6 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC15.21■□□□□ 0.02
ZNF540Q8NDQ6 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
ZNF540Q8NDQ6 CDC14C-201ENST00000428251 1719 ntBASIC15.2■□□□□ 0.02
ZNF540Q8NDQ6 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
ZNF540Q8NDQ6 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC15.2■□□□□ 0.02
ZNF540Q8NDQ6 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
ZNF540Q8NDQ6 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
ZNF540Q8NDQ6 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC15.2■□□□□ 0.02
ZNF540Q8NDQ6 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
ZNF540Q8NDQ6 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC15.2■□□□□ 0.02
ZNF540Q8NDQ6 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC15.2■□□□□ 0.02
ZNF540Q8NDQ6 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC15.2■□□□□ 0.02
ZNF540Q8NDQ6 BET1L-206ENST00000486280 665 ntTSL 3 BASIC15.2■□□□□ 0.02
ZNF540Q8NDQ6 AP002469.2-201ENST00000531724 424 ntBASIC15.2■□□□□ 0.02
ZNF540Q8NDQ6 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC15.2■□□□□ 0.02
ZNF540Q8NDQ6 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
ZNF540Q8NDQ6 AC013467.2-201ENST00000605472 835 ntBASIC15.2■□□□□ 0.02
ZNF540Q8NDQ6 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
ZNF540Q8NDQ6 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
ZNF540Q8NDQ6 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
ZNF540Q8NDQ6 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
ZNF540Q8NDQ6 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC15.2■□□□□ 0.02
ZNF540Q8NDQ6 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
ZNF540Q8NDQ6 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
ZNF540Q8NDQ6 LINC02447-202ENST00000501888 2146 ntBASIC15.2■□□□□ 0.02
ZNF540Q8NDQ6 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
ZNF540Q8NDQ6 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
ZNF540Q8NDQ6 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
ZNF540Q8NDQ6 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
ZNF540Q8NDQ6 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
ZNF540Q8NDQ6 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
ZNF540Q8NDQ6 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC15.2■□□□□ 0.02
ZNF540Q8NDQ6 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
ZNF540Q8NDQ6 AC023157.3-201ENST00000619086 2088 ntBASIC15.2■□□□□ 0.02
ZNF540Q8NDQ6 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
ZNF540Q8NDQ6 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
ZNF540Q8NDQ6 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
ZNF540Q8NDQ6 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
ZNF540Q8NDQ6 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
ZNF540Q8NDQ6 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC15.19■□□□□ 0.02
ZNF540Q8NDQ6 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
ZNF540Q8NDQ6 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.19■□□□□ 0.02
ZNF540Q8NDQ6 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
ZNF540Q8NDQ6 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
ZNF540Q8NDQ6 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
ZNF540Q8NDQ6 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 61.8 ms