Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 GGT3P-204ENST00000453783 1664 ntBASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
HDDC3Q8N4P3 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
HDDC3Q8N4P3 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.21
HDDC3Q8N4P3 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
HDDC3Q8N4P3 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.21
HDDC3Q8N4P3 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.33■□□□□ 0.21
HDDC3Q8N4P3 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
HDDC3Q8N4P3 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
HDDC3Q8N4P3 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 AL080243.2-201ENST00000418783 582 ntBASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 AC022494.1-201ENST00000466044 728 ntBASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 AC009407.1-201ENST00000568958 598 ntBASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 AL844908.2-201ENST00000609461 460 ntBASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 UBALD1-205ENST00000590891 2641 ntBASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 HLA-A-202ENST00000376806 1854 ntBASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
HDDC3Q8N4P3 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 GIMAP3P-201ENST00000495150 836 ntBASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 HILS1-202ENST00000545329 423 ntBASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 PRR29-204ENST00000577953 565 ntTSL 4 BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 AC008738.7-201ENST00000609744 511 ntBASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HDDC3Q8N4P3 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms