Protein–RNA interactions for Protein: Q8IWZ4

TRIM48, Tripartite motif-containing protein 48, humanhuman

Predictions only

Length 208 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48Q8IWZ4 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM48Q8IWZ4 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 AC073439.1-201ENST00000624121 1774 ntBASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 HLA-DRB6-201ENST00000411500 1235 ntBASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 AC084121.4-201ENST00000641598 221 ntBASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 AF228730.8-201ENST00000642140 221 ntBASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
TRIM48Q8IWZ4 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 AC008741.2-201ENST00000612792 3115 ntBASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 MIR346-201ENST00000362234 95 ntBASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 GPS2P2-201ENST00000430745 888 ntBASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 AC069262.1-201ENST00000539058 672 ntBASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 AC073389.1-201ENST00000595595 795 ntBASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 GPAA1P2-202ENST00000606848 1787 ntBASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.05■□□□□ 0.16
TRIM48Q8IWZ4 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM48Q8IWZ4 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM48Q8IWZ4 AL031731.1-201ENST00000642131 2094 ntBASIC16.04■□□□□ 0.16
TRIM48Q8IWZ4 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM48Q8IWZ4 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM48Q8IWZ4 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM48Q8IWZ4 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM48Q8IWZ4 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM48Q8IWZ4 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms