Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC20.3■□□□□ 0.84
RFC4P35249 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC20.3■□□□□ 0.84
RFC4P35249 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC20.3■□□□□ 0.84
RFC4P35249 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC20.3■□□□□ 0.84
RFC4P35249 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RFC4P35249 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC20.3■□□□□ 0.84
RFC4P35249 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
RFC4P35249 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
RFC4P35249 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC20.29■□□□□ 0.84
RFC4P35249 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFC4P35249 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RFC4P35249 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFC4P35249 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC20.29■□□□□ 0.84
RFC4P35249 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC20.29■□□□□ 0.84
RFC4P35249 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFC4P35249 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC20.29■□□□□ 0.84
RFC4P35249 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RFC4P35249 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFC4P35249 TP73-213ENST00000604479 1623 ntTSL 5 BASIC20.29■□□□□ 0.84
RFC4P35249 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFC4P35249 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RFC4P35249 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
RFC4P35249 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RFC4P35249 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RFC4P35249 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFC4P35249 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RFC4P35249 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC20.29■□□□□ 0.84
RFC4P35249 PFN1P12-201ENST00000455938 534 ntBASIC20.29■□□□□ 0.84
RFC4P35249 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC20.29■□□□□ 0.84
RFC4P35249 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC20.29■□□□□ 0.84
RFC4P35249 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC20.29■□□□□ 0.84
RFC4P35249 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC20.29■□□□□ 0.84
RFC4P35249 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC20.29■□□□□ 0.84
RFC4P35249 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFC4P35249 LINC01144-201ENST00000626198 1710 ntBASIC20.29■□□□□ 0.84
RFC4P35249 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
RFC4P35249 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFC4P35249 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC20.29■□□□□ 0.84
RFC4P35249 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFC4P35249 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFC4P35249 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFC4P35249 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC20.29■□□□□ 0.84
RFC4P35249 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFC4P35249 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFC4P35249 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC20.29■□□□□ 0.84
RFC4P35249 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
RFC4P35249 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC20.28■□□□□ 0.84
RFC4P35249 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC20.28■□□□□ 0.84
RFC4P35249 AMT-206ENST00000458307 1860 ntTSL 2 BASIC20.28■□□□□ 0.84
RFC4P35249 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RFC4P35249 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RFC4P35249 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
RFC4P35249 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC20.28■□□□□ 0.84
RFC4P35249 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RFC4P35249 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC20.28■□□□□ 0.84
RFC4P35249 AC004987.2-201ENST00000395959 1148 ntBASIC20.28■□□□□ 0.84
RFC4P35249 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RFC4P35249 AZGP1P1-201ENST00000411909 902 ntBASIC20.28■□□□□ 0.84
RFC4P35249 AL355864.2-201ENST00000447420 863 ntBASIC20.28■□□□□ 0.84
RFC4P35249 AC007551.1-201ENST00000457394 519 ntBASIC20.28■□□□□ 0.84
RFC4P35249 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC20.28■□□□□ 0.84
RFC4P35249 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC20.28■□□□□ 0.84
RFC4P35249 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC20.28■□□□□ 0.84
RFC4P35249 AP000812.2-201ENST00000538934 718 ntBASIC20.28■□□□□ 0.84
RFC4P35249 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RFC4P35249 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC20.28■□□□□ 0.84
RFC4P35249 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
RFC4P35249 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC20.28■□□□□ 0.84
RFC4P35249 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC20.28■□□□□ 0.84
RFC4P35249 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RFC4P35249 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RFC4P35249 AL603756.1-201ENST00000606511 2163 ntBASIC20.28■□□□□ 0.84
RFC4P35249 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
RFC4P35249 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
RFC4P35249 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RFC4P35249 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC20.27■□□□□ 0.84
RFC4P35249 LOX-206ENST00000639739 1626 ntTSL 5 BASIC20.27■□□□□ 0.84
RFC4P35249 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
RFC4P35249 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
RFC4P35249 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC20.27■□□□□ 0.84
RFC4P35249 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC20.27■□□□□ 0.84
RFC4P35249 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RFC4P35249 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RFC4P35249 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC20.27■□□□□ 0.84
RFC4P35249 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RFC4P35249 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC20.27■□□□□ 0.84
RFC4P35249 AC134915.1-201ENST00000426461 574 ntBASIC20.27■□□□□ 0.84
RFC4P35249 TPI1-206ENST00000488464 791 ntTSL 5 BASIC20.27■□□□□ 0.84
RFC4P35249 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RFC4P35249 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC20.27■□□□□ 0.84
RFC4P35249 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RFC4P35249 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC20.27■□□□□ 0.84
RFC4P35249 IGHV3OR16-16-201ENST00000563644 343 ntBASIC20.27■□□□□ 0.84
RFC4P35249 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC20.27■□□□□ 0.84
RFC4P35249 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
RFC4P35249 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RFC4P35249 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RFC4P35249 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
RFC4P35249 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RFC4P35249 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms