Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC18.3■□□□□ 0.52
CIITAP33076 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC18.3■□□□□ 0.52
CIITAP33076 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
CIITAP33076 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CIITAP33076 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC18.3■□□□□ 0.52
CIITAP33076 AL589739.1-201ENST00000607720 493 ntBASIC18.3■□□□□ 0.52
CIITAP33076 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC18.3■□□□□ 0.52
CIITAP33076 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC18.3■□□□□ 0.52
CIITAP33076 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CIITAP33076 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CIITAP33076 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
CIITAP33076 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC18.3■□□□□ 0.52
CIITAP33076 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC18.3■□□□□ 0.52
CIITAP33076 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CIITAP33076 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC18.3■□□□□ 0.52
CIITAP33076 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
CIITAP33076 CYP4F24P-201ENST00000586049 1580 ntBASIC18.3■□□□□ 0.52
CIITAP33076 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC18.29■□□□□ 0.52
CIITAP33076 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CIITAP33076 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
CIITAP33076 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
CIITAP33076 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC18.29■□□□□ 0.52
CIITAP33076 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
CIITAP33076 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CIITAP33076 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
CIITAP33076 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CIITAP33076 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CIITAP33076 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CIITAP33076 MIR648-201ENST00000385046 94 ntBASIC18.29■□□□□ 0.52
CIITAP33076 TSSK5P-201ENST00000423978 907 ntBASIC18.29■□□□□ 0.52
CIITAP33076 HMGN1P19-201ENST00000436976 333 ntBASIC18.29■□□□□ 0.52
CIITAP33076 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC18.29■□□□□ 0.52
CIITAP33076 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC18.29■□□□□ 0.52
CIITAP33076 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC18.29■□□□□ 0.52
CIITAP33076 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC18.29■□□□□ 0.52
CIITAP33076 TEX28P1-201ENST00000613479 1221 ntBASIC18.29■□□□□ 0.52
CIITAP33076 TEX28P2-201ENST00000617764 1221 ntBASIC18.29■□□□□ 0.52
CIITAP33076 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC18.29■□□□□ 0.52
CIITAP33076 AL662844.4-201ENST00000606367 2838 ntBASIC18.29■□□□□ 0.52
CIITAP33076 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CIITAP33076 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CIITAP33076 KRT8P12-202ENST00000472924 1397 ntBASIC18.29■□□□□ 0.52
CIITAP33076 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC18.28■□□□□ 0.52
CIITAP33076 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC18.28■□□□□ 0.52
CIITAP33076 CYP2T1P-202ENST00000641596 2535 ntBASIC18.28■□□□□ 0.52
CIITAP33076 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CIITAP33076 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CIITAP33076 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CIITAP33076 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CIITAP33076 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CIITAP33076 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC18.28■□□□□ 0.52
CIITAP33076 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
CIITAP33076 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CIITAP33076 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC18.28■□□□□ 0.52
CIITAP33076 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CIITAP33076 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CIITAP33076 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CIITAP33076 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
CIITAP33076 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CIITAP33076 AC004987.2-201ENST00000395959 1148 ntBASIC18.28■□□□□ 0.52
CIITAP33076 HAUS4P1-201ENST00000406739 1145 ntBASIC18.28■□□□□ 0.52
CIITAP33076 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CIITAP33076 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC18.28■□□□□ 0.52
CIITAP33076 EEF1DP4-201ENST00000446006 880 ntBASIC18.28■□□□□ 0.52
CIITAP33076 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC18.28■□□□□ 0.52
CIITAP33076 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CIITAP33076 AQP6-203ENST00000551733 849 ntTSL 3 BASIC18.28■□□□□ 0.52
CIITAP33076 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC18.28■□□□□ 0.52
CIITAP33076 AL590560.3-201ENST00000623350 461 ntBASIC18.28■□□□□ 0.52
CIITAP33076 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CIITAP33076 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CIITAP33076 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CIITAP33076 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CIITAP33076 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CIITAP33076 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC18.28■□□□□ 0.52
CIITAP33076 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CIITAP33076 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC18.28■□□□□ 0.52
CIITAP33076 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CIITAP33076 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CIITAP33076 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CIITAP33076 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CIITAP33076 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
CIITAP33076 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CIITAP33076 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC18.27■□□□□ 0.52
CIITAP33076 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CIITAP33076 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
CIITAP33076 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CIITAP33076 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CIITAP33076 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CIITAP33076 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CIITAP33076 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
CIITAP33076 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
CIITAP33076 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
CIITAP33076 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CIITAP33076 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC18.27■□□□□ 0.52
CIITAP33076 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC18.27■□□□□ 0.52
CIITAP33076 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CIITAP33076 CENPM-205ENST00000404067 905 ntTSL 3 BASIC18.27■□□□□ 0.52
CIITAP33076 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CIITAP33076 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms