Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC021097.1-201ENST00000607902 574 ntBASIC16.58■□□□□ 0.24
VCANP13611 METTL26-214ENST00000614890 801 ntTSL 3 BASIC16.58■□□□□ 0.24
VCANP13611 CDK7-214ENST00000626796 358 ntTSL 5 BASIC16.58■□□□□ 0.24
VCANP13611 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC16.58■□□□□ 0.24
VCANP13611 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VCANP13611 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VCANP13611 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VCANP13611 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
VCANP13611 PTK7-212ENST00000476760 902 ntTSL 2 BASIC16.58■□□□□ 0.24
VCANP13611 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VCANP13611 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VCANP13611 ACR-203ENST00000529621 708 ntTSL 5 BASIC16.58■□□□□ 0.24
VCANP13611 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC16.58■□□□□ 0.24
VCANP13611 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC16.58■□□□□ 0.24
VCANP13611 LINC01115-203ENST00000606068 577 ntBASIC16.58■□□□□ 0.24
VCANP13611 AC134312.5-201ENST00000568031 1313 ntBASIC16.58■□□□□ 0.24
VCANP13611 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VCANP13611 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VCANP13611 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC16.58■□□□□ 0.24
VCANP13611 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
VCANP13611 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC16.58■□□□□ 0.24
VCANP13611 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
VCANP13611 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.57■□□□□ 0.24
VCANP13611 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16.57■□□□□ 0.24
VCANP13611 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCANP13611 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC16.57■□□□□ 0.24
VCANP13611 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC16.57■□□□□ 0.24
VCANP13611 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC16.57■□□□□ 0.24
VCANP13611 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC16.57■□□□□ 0.24
VCANP13611 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCANP13611 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCANP13611 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCANP13611 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VCANP13611 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCANP13611 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCANP13611 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCANP13611 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCANP13611 AC234782.1-201ENST00000451950 919 ntBASIC16.57■□□□□ 0.24
VCANP13611 AC106794.1-201ENST00000506935 792 ntBASIC16.57■□□□□ 0.24
VCANP13611 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
VCANP13611 AC023310.1-201ENST00000554836 735 ntBASIC16.57■□□□□ 0.24
VCANP13611 AC092068.3-201ENST00000587894 2016 ntBASIC16.57■□□□□ 0.24
VCANP13611 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC16.57■□□□□ 0.24
VCANP13611 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCANP13611 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCANP13611 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCANP13611 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
VCANP13611 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCANP13611 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC16.57■□□□□ 0.24
VCANP13611 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC16.57■□□□□ 0.24
VCANP13611 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCANP13611 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC16.57■□□□□ 0.24
VCANP13611 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC16.57■□□□□ 0.24
VCANP13611 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC16.57■□□□□ 0.24
VCANP13611 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
VCANP13611 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VCANP13611 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VCANP13611 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC16.56■□□□□ 0.24
VCANP13611 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VCANP13611 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
VCANP13611 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VCANP13611 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VCANP13611 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC16.56■□□□□ 0.24
VCANP13611 ACTG1P2-201ENST00000415776 1125 ntBASIC16.56■□□□□ 0.24
VCANP13611 ACTG1P11-201ENST00000425411 1125 ntBASIC16.56■□□□□ 0.24
VCANP13611 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC16.56■□□□□ 0.24
VCANP13611 ITGA9-AS1-205ENST00000438136 578 ntTSL 4 BASIC16.56■□□□□ 0.24
VCANP13611 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC16.56■□□□□ 0.24
VCANP13611 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC16.56■□□□□ 0.24
VCANP13611 AL118516.1-201ENST00000564152 670 ntBASIC16.56■□□□□ 0.24
VCANP13611 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VCANP13611 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.56■□□□□ 0.24
VCANP13611 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
VCANP13611 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VCANP13611 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VCANP13611 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
VCANP13611 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VCANP13611 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
VCANP13611 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VCANP13611 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
VCANP13611 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VCANP13611 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
VCANP13611 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC16.56■□□□□ 0.24
VCANP13611 CENPX-208ENST00000584347 799 ntTSL 2 BASIC16.56■□□□□ 0.24
VCANP13611 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VCANP13611 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC16.56■□□□□ 0.24
VCANP13611 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
VCANP13611 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VCANP13611 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC16.56■□□□□ 0.24
VCANP13611 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VCANP13611 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VCANP13611 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
VCANP13611 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VCANP13611 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VCANP13611 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC16.55■□□□□ 0.24
VCANP13611 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VCANP13611 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC16.55■□□□□ 0.24
VCANP13611 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VCANP13611 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
VCANP13611 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 135.8 ms