Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC4P09017 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC15.8■□□□□ 0.12
HOXC4P09017 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC15.8■□□□□ 0.12
HOXC4P09017 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC15.8■□□□□ 0.12
HOXC4P09017 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC15.8■□□□□ 0.12
HOXC4P09017 DOC2GP-202ENST00000514950 1163 ntBASIC15.8■□□□□ 0.12
HOXC4P09017 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC15.8■□□□□ 0.12
HOXC4P09017 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC15.8■□□□□ 0.12
HOXC4P09017 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC4P09017 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC15.8■□□□□ 0.12
HOXC4P09017 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC15.8■□□□□ 0.12
HOXC4P09017 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC4P09017 AL109936.8-201ENST00000641772 604 ntBASIC15.8■□□□□ 0.12
HOXC4P09017 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC4P09017 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC4P09017 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC4P09017 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC4P09017 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC4P09017 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC15.8■□□□□ 0.12
HOXC4P09017 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC4P09017 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC4P09017 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC4P09017 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC4P09017 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC4P09017 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC4P09017 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC4P09017 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC15.8■□□□□ 0.12
HOXC4P09017 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
HOXC4P09017 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC4P09017 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC4P09017 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.8■□□□□ 0.12
HOXC4P09017 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.8■□□□□ 0.12
HOXC4P09017 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC15.8■□□□□ 0.12
HOXC4P09017 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC15.79■□□□□ 0.12
HOXC4P09017 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HOXC4P09017 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
HOXC4P09017 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HOXC4P09017 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HOXC4P09017 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HOXC4P09017 AC006449.6-201ENST00000612330 2296 ntBASIC15.79■□□□□ 0.12
HOXC4P09017 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HOXC4P09017 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
HOXC4P09017 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC15.79■□□□□ 0.12
HOXC4P09017 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HOXC4P09017 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HOXC4P09017 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HOXC4P09017 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HOXC4P09017 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
HOXC4P09017 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC15.79■□□□□ 0.12
HOXC4P09017 AC087499.6-201ENST00000411576 835 ntBASIC15.79■□□□□ 0.12
HOXC4P09017 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC15.79■□□□□ 0.12
HOXC4P09017 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC15.79■□□□□ 0.12
HOXC4P09017 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
HOXC4P09017 AC104794.3-201ENST00000566840 1248 ntBASIC15.79■□□□□ 0.12
HOXC4P09017 TP53TG3HP-202ENST00000569755 579 ntBASIC15.79■□□□□ 0.12
HOXC4P09017 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC15.79■□□□□ 0.12
HOXC4P09017 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HOXC4P09017 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC15.79■□□□□ 0.12
HOXC4P09017 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.79■□□□□ 0.12
HOXC4P09017 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC15.79■□□□□ 0.12
HOXC4P09017 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC15.79■□□□□ 0.12
HOXC4P09017 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
HOXC4P09017 AC009053.2-201ENST00000563701 2365 ntBASIC15.79■□□□□ 0.12
HOXC4P09017 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
HOXC4P09017 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HOXC4P09017 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
HOXC4P09017 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HOXC4P09017 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC15.79■□□□□ 0.12
HOXC4P09017 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
HOXC4P09017 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HOXC4P09017 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC15.79■□□□□ 0.12
HOXC4P09017 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HOXC4P09017 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
HOXC4P09017 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HOXC4P09017 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HOXC4P09017 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HOXC4P09017 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
HOXC4P09017 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
HOXC4P09017 AC005052.1-201ENST00000625181 2492 ntBASIC15.78■□□□□ 0.12
HOXC4P09017 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC15.78■□□□□ 0.12
HOXC4P09017 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
HOXC4P09017 AC007541.1-201ENST00000570282 1469 ntBASIC15.78■□□□□ 0.12
HOXC4P09017 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC15.78■□□□□ 0.12
HOXC4P09017 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HOXC4P09017 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC15.78■□□□□ 0.12
HOXC4P09017 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
HOXC4P09017 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
HOXC4P09017 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HOXC4P09017 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HOXC4P09017 PRORSD1P-202ENST00000563365 2154 ntBASIC15.78■□□□□ 0.12
HOXC4P09017 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HOXC4P09017 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC15.78■□□□□ 0.12
HOXC4P09017 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC15.78■□□□□ 0.12
HOXC4P09017 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
HOXC4P09017 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC15.78■□□□□ 0.12
HOXC4P09017 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
HOXC4P09017 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC15.78■□□□□ 0.12
HOXC4P09017 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HOXC4P09017 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HOXC4P09017 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 61.6 ms