Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
SPTA1P02549 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
SPTA1P02549 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC14.72□□□□□ -0.05
SPTA1P02549 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
SPTA1P02549 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SPTA1P02549 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SPTA1P02549 CD276-203ENST00000537340 2439 ntTSL 2 BASIC14.72□□□□□ -0.05
SPTA1P02549 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
SPTA1P02549 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SPTA1P02549 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SPTA1P02549 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SPTA1P02549 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SPTA1P02549 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SPTA1P02549 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
SPTA1P02549 RAD18-204ENST00000418463 563 ntTSL 4 BASIC14.72□□□□□ -0.05
SPTA1P02549 RAD18-205ENST00000421052 582 ntTSL 3 BASIC14.72□□□□□ -0.05
SPTA1P02549 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC14.72□□□□□ -0.05
SPTA1P02549 RN7SL399P-201ENST00000471648 279 ntBASIC14.72□□□□□ -0.05
SPTA1P02549 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC14.72□□□□□ -0.05
SPTA1P02549 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC14.72□□□□□ -0.05
SPTA1P02549 PTP4A1P2-201ENST00000546033 454 ntBASIC14.72□□□□□ -0.05
SPTA1P02549 U62317.3-201ENST00000608319 855 ntBASIC14.72□□□□□ -0.05
SPTA1P02549 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
SPTA1P02549 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SPTA1P02549 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SPTA1P02549 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SPTA1P02549 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SPTA1P02549 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SPTA1P02549 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SPTA1P02549 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
SPTA1P02549 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
SPTA1P02549 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC14.71□□□□□ -0.05
SPTA1P02549 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
SPTA1P02549 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
SPTA1P02549 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SPTA1P02549 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SPTA1P02549 GGCT-203ENST00000409144 836 ntTSL 2 BASIC14.71□□□□□ -0.05
SPTA1P02549 WDR53-204ENST00000433160 887 ntTSL 5 BASIC14.71□□□□□ -0.05
SPTA1P02549 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SPTA1P02549 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC14.71□□□□□ -0.05
SPTA1P02549 NME4-207ENST00000450036 985 ntTSL 3 BASIC14.71□□□□□ -0.05
SPTA1P02549 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC14.71□□□□□ -0.05
SPTA1P02549 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC14.71□□□□□ -0.05
SPTA1P02549 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SPTA1P02549 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC14.71□□□□□ -0.05
SPTA1P02549 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC14.71□□□□□ -0.05
SPTA1P02549 AL365330.1-201ENST00000607459 531 ntBASIC14.71□□□□□ -0.05
SPTA1P02549 CASP16P-204ENST00000635032 809 ntBASIC14.71□□□□□ -0.05
SPTA1P02549 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC14.71□□□□□ -0.05
SPTA1P02549 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
SPTA1P02549 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SPTA1P02549 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SPTA1P02549 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
SPTA1P02549 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SPTA1P02549 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
SPTA1P02549 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SPTA1P02549 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SPTA1P02549 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
SPTA1P02549 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.71□□□□□ -0.05
SPTA1P02549 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
SPTA1P02549 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SPTA1P02549 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
SPTA1P02549 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.06
SPTA1P02549 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
SPTA1P02549 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
SPTA1P02549 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC14.71□□□□□ -0.06
SPTA1P02549 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC14.71□□□□□ -0.06
SPTA1P02549 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
SPTA1P02549 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
SPTA1P02549 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
SPTA1P02549 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.06
SPTA1P02549 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.06
SPTA1P02549 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
SPTA1P02549 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
SPTA1P02549 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC14.71□□□□□ -0.06
SPTA1P02549 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
SPTA1P02549 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.06
SPTA1P02549 RPL13AP25-201ENST00000484130 612 ntBASIC14.71□□□□□ -0.06
SPTA1P02549 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
SPTA1P02549 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC14.71□□□□□ -0.06
SPTA1P02549 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC14.71□□□□□ -0.06
SPTA1P02549 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.06
SPTA1P02549 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
SPTA1P02549 MIR7845-201ENST00000618396 99 ntBASIC14.71□□□□□ -0.06
SPTA1P02549 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
SPTA1P02549 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
SPTA1P02549 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
SPTA1P02549 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC14.71□□□□□ -0.06
SPTA1P02549 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SPTA1P02549 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
SPTA1P02549 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC14.7□□□□□ -0.06
SPTA1P02549 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SPTA1P02549 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SPTA1P02549 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC14.7□□□□□ -0.06
SPTA1P02549 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SPTA1P02549 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SPTA1P02549 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SPTA1P02549 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
SPTA1P02549 RPS3-201ENST00000278572 907 ntTSL 3 BASIC14.7□□□□□ -0.06
SPTA1P02549 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms