Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC18.25■□□□□ 0.51
MSH4O15457 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
MSH4O15457 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
MSH4O15457 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSH4O15457 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
MSH4O15457 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSH4O15457 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MSH4O15457 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSH4O15457 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
MSH4O15457 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSH4O15457 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
MSH4O15457 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC18.24■□□□□ 0.51
MSH4O15457 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC18.24■□□□□ 0.51
MSH4O15457 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSH4O15457 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSH4O15457 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
MSH4O15457 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSH4O15457 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSH4O15457 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
MSH4O15457 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSH4O15457 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC18.24■□□□□ 0.51
MSH4O15457 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSH4O15457 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC18.24■□□□□ 0.51
MSH4O15457 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC18.24■□□□□ 0.51
MSH4O15457 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC18.24■□□□□ 0.51
MSH4O15457 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
MSH4O15457 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC18.24■□□□□ 0.51
MSH4O15457 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
MSH4O15457 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC18.24■□□□□ 0.51
MSH4O15457 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC18.24■□□□□ 0.51
MSH4O15457 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
MSH4O15457 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
MSH4O15457 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
MSH4O15457 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSH4O15457 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
MSH4O15457 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC18.24■□□□□ 0.51
MSH4O15457 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
MSH4O15457 PGR-209ENST00000617858 2816 ntTSL 5 BASIC18.24■□□□□ 0.51
MSH4O15457 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC18.24■□□□□ 0.51
MSH4O15457 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC18.24■□□□□ 0.51
MSH4O15457 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSH4O15457 CETN4P-206ENST00000642099 2168 ntBASIC18.24■□□□□ 0.51
MSH4O15457 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSH4O15457 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSH4O15457 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MSH4O15457 AL691432.1-201ENST00000596308 1422 ntBASIC18.23■□□□□ 0.51
MSH4O15457 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
MSH4O15457 SP100-205ENST00000409824 1802 ntTSL 5 BASIC18.23■□□□□ 0.51
MSH4O15457 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC18.23■□□□□ 0.51
MSH4O15457 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
MSH4O15457 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
MSH4O15457 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
MSH4O15457 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
MSH4O15457 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
MSH4O15457 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
MSH4O15457 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
MSH4O15457 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
MSH4O15457 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
MSH4O15457 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
MSH4O15457 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
MSH4O15457 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
MSH4O15457 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
MSH4O15457 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
MSH4O15457 SYS1-203ENST00000414310 795 ntTSL 3 BASIC18.23■□□□□ 0.51
MSH4O15457 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC18.23■□□□□ 0.51
MSH4O15457 AL080243.2-201ENST00000418783 582 ntBASIC18.23■□□□□ 0.51
MSH4O15457 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC18.23■□□□□ 0.51
MSH4O15457 AC093214.1-201ENST00000511688 1107 ntBASIC18.23■□□□□ 0.51
MSH4O15457 IGHV3-42-201ENST00000520410 361 ntBASIC18.23■□□□□ 0.51
MSH4O15457 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
MSH4O15457 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC18.23■□□□□ 0.51
MSH4O15457 AL390754.1-201ENST00000619088 582 ntBASIC18.23■□□□□ 0.51
MSH4O15457 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC18.23■□□□□ 0.51
MSH4O15457 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
MSH4O15457 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC18.23■□□□□ 0.51
MSH4O15457 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
MSH4O15457 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
MSH4O15457 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
MSH4O15457 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC18.23■□□□□ 0.51
MSH4O15457 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSH4O15457 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC18.22■□□□□ 0.51
MSH4O15457 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSH4O15457 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSH4O15457 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSH4O15457 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSH4O15457 CYP4F24P-201ENST00000586049 1580 ntBASIC18.22■□□□□ 0.51
MSH4O15457 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSH4O15457 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
MSH4O15457 RPS19-201ENST00000221975 500 ntTSL 3 BASIC18.22■□□□□ 0.51
MSH4O15457 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSH4O15457 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
MSH4O15457 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSH4O15457 VMA21-202ENST00000370361 693 ntTSL 5 BASIC18.22■□□□□ 0.51
MSH4O15457 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
MSH4O15457 SPDYE17-201ENST00000412399 783 ntBASIC18.22■□□□□ 0.51
MSH4O15457 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
MSH4O15457 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC18.22■□□□□ 0.51
MSH4O15457 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC18.22■□□□□ 0.51
MSH4O15457 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC18.22■□□□□ 0.51
MSH4O15457 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms