Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
FOXN3O00409 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
FOXN3O00409 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXN3O00409 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXN3O00409 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC17.47■□□□□ 0.39
FOXN3O00409 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC17.47■□□□□ 0.39
FOXN3O00409 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC17.47■□□□□ 0.39
FOXN3O00409 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXN3O00409 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC17.47■□□□□ 0.39
FOXN3O00409 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC17.47■□□□□ 0.39
FOXN3O00409 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXN3O00409 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXN3O00409 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXN3O00409 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC17.47■□□□□ 0.39
FOXN3O00409 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC17.47■□□□□ 0.39
FOXN3O00409 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXN3O00409 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
FOXN3O00409 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC17.47■□□□□ 0.39
FOXN3O00409 BSG-215ENST00000618006 1329 ntTSL 2 BASIC17.47■□□□□ 0.39
FOXN3O00409 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
FOXN3O00409 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC17.46■□□□□ 0.39
FOXN3O00409 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC17.46■□□□□ 0.39
FOXN3O00409 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
FOXN3O00409 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC17.46■□□□□ 0.39
FOXN3O00409 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
FOXN3O00409 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
FOXN3O00409 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
FOXN3O00409 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
FOXN3O00409 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
FOXN3O00409 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC17.46■□□□□ 0.39
FOXN3O00409 IGHV3OR16-6-201ENST00000568775 360 ntBASIC17.46■□□□□ 0.39
FOXN3O00409 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC17.46■□□□□ 0.39
FOXN3O00409 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC17.46■□□□□ 0.39
FOXN3O00409 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
FOXN3O00409 AL671883.3-201ENST00000603274 991 ntBASIC17.46■□□□□ 0.39
FOXN3O00409 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC17.46■□□□□ 0.39
FOXN3O00409 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC17.46■□□□□ 0.39
FOXN3O00409 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
FOXN3O00409 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC17.46■□□□□ 0.39
FOXN3O00409 AP005117.1-202ENST00000581724 1908 ntBASIC17.46■□□□□ 0.39
FOXN3O00409 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC17.46■□□□□ 0.39
FOXN3O00409 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC17.46■□□□□ 0.39
FOXN3O00409 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
FOXN3O00409 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
FOXN3O00409 PRAL-201ENST00000624952 3286 ntBASIC17.46■□□□□ 0.39
FOXN3O00409 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
FOXN3O00409 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
FOXN3O00409 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
FOXN3O00409 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.38
FOXN3O00409 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC17.46■□□□□ 0.38
FOXN3O00409 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
FOXN3O00409 PMS2P7-201ENST00000506558 1336 ntBASIC17.46■□□□□ 0.38
FOXN3O00409 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.38
FOXN3O00409 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC17.45■□□□□ 0.38
FOXN3O00409 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC17.45■□□□□ 0.38
FOXN3O00409 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
FOXN3O00409 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
FOXN3O00409 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC17.45■□□□□ 0.38
FOXN3O00409 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
FOXN3O00409 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
FOXN3O00409 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
FOXN3O00409 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
FOXN3O00409 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC17.45■□□□□ 0.38
FOXN3O00409 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
FOXN3O00409 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
FOXN3O00409 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
FOXN3O00409 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
FOXN3O00409 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
FOXN3O00409 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC17.45■□□□□ 0.38
FOXN3O00409 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
FOXN3O00409 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
FOXN3O00409 AL355306.1-201ENST00000415580 579 ntBASIC17.45■□□□□ 0.38
FOXN3O00409 MCCD1P2-201ENST00000423228 335 ntBASIC17.45■□□□□ 0.38
FOXN3O00409 FAM58CP-201ENST00000435741 640 ntBASIC17.45■□□□□ 0.38
FOXN3O00409 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC17.45■□□□□ 0.38
FOXN3O00409 AC040169.1-201ENST00000565382 521 ntBASIC17.45■□□□□ 0.38
FOXN3O00409 INO80E-210ENST00000567705 880 ntTSL 3 BASIC17.45■□□□□ 0.38
FOXN3O00409 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC17.45■□□□□ 0.38
FOXN3O00409 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
FOXN3O00409 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
FOXN3O00409 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC17.45■□□□□ 0.38
FOXN3O00409 FOXO1B-201ENST00000504678 1527 ntBASIC17.45■□□□□ 0.38
FOXN3O00409 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
FOXN3O00409 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
FOXN3O00409 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
FOXN3O00409 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
FOXN3O00409 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
FOXN3O00409 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
FOXN3O00409 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC17.45■□□□□ 0.38
FOXN3O00409 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
FOXN3O00409 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC17.45■□□□□ 0.38
FOXN3O00409 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
FOXN3O00409 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC17.45■□□□□ 0.38
FOXN3O00409 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
FOXN3O00409 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
FOXN3O00409 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
FOXN3O00409 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
FOXN3O00409 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC17.45■□□□□ 0.38
FOXN3O00409 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
FOXN3O00409 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms