Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
SMKR1H3BMG3 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
SMKR1H3BMG3 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
SMKR1H3BMG3 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
SMKR1H3BMG3 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
SMKR1H3BMG3 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC12□□□□□ -0.49
SMKR1H3BMG3 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
SMKR1H3BMG3 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC12□□□□□ -0.49
SMKR1H3BMG3 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC12□□□□□ -0.49
SMKR1H3BMG3 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC12□□□□□ -0.49
SMKR1H3BMG3 LIN28AP1-201ENST00000429574 405 ntBASIC12□□□□□ -0.49
SMKR1H3BMG3 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC12□□□□□ -0.49
SMKR1H3BMG3 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
SMKR1H3BMG3 RN7SL606P-201ENST00000472779 293 ntBASIC12□□□□□ -0.49
SMKR1H3BMG3 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC12□□□□□ -0.49
SMKR1H3BMG3 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC12□□□□□ -0.49
SMKR1H3BMG3 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC12□□□□□ -0.49
SMKR1H3BMG3 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
SMKR1H3BMG3 AC010203.1-204ENST00000548782 407 ntBASIC12□□□□□ -0.49
SMKR1H3BMG3 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
SMKR1H3BMG3 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC12□□□□□ -0.49
SMKR1H3BMG3 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
SMKR1H3BMG3 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC12□□□□□ -0.49
SMKR1H3BMG3 AC139887.4-201ENST00000607877 719 ntBASIC12□□□□□ -0.49
SMKR1H3BMG3 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC12□□□□□ -0.49
SMKR1H3BMG3 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC12□□□□□ -0.49
SMKR1H3BMG3 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC12□□□□□ -0.49
SMKR1H3BMG3 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC12□□□□□ -0.49
SMKR1H3BMG3 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC12□□□□□ -0.49
SMKR1H3BMG3 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
SMKR1H3BMG3 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC12□□□□□ -0.49
SMKR1H3BMG3 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC12□□□□□ -0.49
SMKR1H3BMG3 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC12□□□□□ -0.49
SMKR1H3BMG3 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
SMKR1H3BMG3 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC12□□□□□ -0.49
SMKR1H3BMG3 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC12□□□□□ -0.49
SMKR1H3BMG3 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
SMKR1H3BMG3 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC12□□□□□ -0.49
SMKR1H3BMG3 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC12□□□□□ -0.49
SMKR1H3BMG3 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC12□□□□□ -0.49
SMKR1H3BMG3 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC12□□□□□ -0.49
SMKR1H3BMG3 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
SMKR1H3BMG3 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC12□□□□□ -0.49
SMKR1H3BMG3 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC12□□□□□ -0.49
SMKR1H3BMG3 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
SMKR1H3BMG3 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
SMKR1H3BMG3 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 DKFZP434H168-201ENST00000567381 1905 ntBASIC11.99□□□□□ -0.49
SMKR1H3BMG3 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 AL109954.1-202ENST00000564051 2148 ntBASIC11.99□□□□□ -0.49
SMKR1H3BMG3 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 SRP19-202ENST00000445150 833 ntTSL 2 BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 AC112907.2-201ENST00000448639 330 ntBASIC11.99□□□□□ -0.49
SMKR1H3BMG3 SIGLEC30P-201ENST00000455569 941 ntBASIC11.99□□□□□ -0.49
SMKR1H3BMG3 POU5F1P6-201ENST00000466990 990 ntBASIC11.99□□□□□ -0.49
SMKR1H3BMG3 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 DUT-205ENST00000558813 769 ntTSL 2 BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 AC004817.3-201ENST00000602957 2129 ntBASIC11.99□□□□□ -0.49
SMKR1H3BMG3 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SMKR1H3BMG3 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC11.99□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms