Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC16.6■□□□□ 0.25
TCRBV7S3A2A0A539 AQP6-205ENST00000618286 829 ntTSL 5 BASIC16.6■□□□□ 0.25
TCRBV7S3A2A0A539 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
TCRBV7S3A2A0A539 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
TCRBV7S3A2A0A539 HLA-A-201ENST00000376802 1334 ntBASIC16.6■□□□□ 0.25
TCRBV7S3A2A0A539 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TCRBV7S3A2A0A539 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
TCRBV7S3A2A0A539 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
TCRBV7S3A2A0A539 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
TCRBV7S3A2A0A539 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TCRBV7S3A2A0A539 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TCRBV7S3A2A0A539 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TCRBV7S3A2A0A539 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TCRBV7S3A2A0A539 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.6■□□□□ 0.25
TCRBV7S3A2A0A539 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TCRBV7S3A2A0A539 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TCRBV7S3A2A0A539 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
TCRBV7S3A2A0A539 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TCRBV7S3A2A0A539 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC16.6■□□□□ 0.25
TCRBV7S3A2A0A539 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
TCRBV7S3A2A0A539 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 AC092850.2-201ENST00000623821 2697 ntBASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 LCK-206ENST00000373564 2137 ntTSL 5 BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 KRT18P2-201ENST00000447938 1258 ntBASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 AL078644.1-201ENST00000609881 752 ntBASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
TCRBV7S3A2A0A539 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
TCRBV7S3A2A0A539 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
TCRBV7S3A2A0A539 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
TCRBV7S3A2A0A539 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
TCRBV7S3A2A0A539 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.58■□□□□ 0.25
TCRBV7S3A2A0A539 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC16.58■□□□□ 0.25
TCRBV7S3A2A0A539 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC16.58■□□□□ 0.25
TCRBV7S3A2A0A539 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
TCRBV7S3A2A0A539 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC16.58■□□□□ 0.25
TCRBV7S3A2A0A539 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.25
TCRBV7S3A2A0A539 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 CFL1-202ENST00000524553 860 ntTSL 2 BASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 KRT126P-201ENST00000549467 1181 ntBASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 AC023141.13-201ENST00000604991 943 ntBASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 Z83851.2-201ENST00000609564 659 ntBASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 AC025580.3-201ENST00000617932 1424 ntBASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 AMT-233ENST00000636522 1620 ntTSL 2 BASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 AC073439.1-201ENST00000624121 1774 ntBASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
TCRBV7S3A2A0A539 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms