Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 AC004832.2-201ENST00000426397 482 ntBASIC16.26■□□□□ 0.19
TREX1Q9NSU2 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC16.26■□□□□ 0.19
TREX1Q9NSU2 POLD2P1-201ENST00000511220 997 ntBASIC16.26■□□□□ 0.19
TREX1Q9NSU2 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC16.26■□□□□ 0.19
TREX1Q9NSU2 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC16.26■□□□□ 0.19
TREX1Q9NSU2 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC16.26■□□□□ 0.19
TREX1Q9NSU2 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC16.26■□□□□ 0.19
TREX1Q9NSU2 CITED2-204ENST00000618718 901 ntTSL 2 BASIC16.26■□□□□ 0.19
TREX1Q9NSU2 AC008267.7-201ENST00000624570 1194 ntBASIC16.26■□□□□ 0.19
TREX1Q9NSU2 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TREX1Q9NSU2 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.26■□□□□ 0.19
TREX1Q9NSU2 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TREX1Q9NSU2 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC16.26■□□□□ 0.19
TREX1Q9NSU2 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
TREX1Q9NSU2 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TREX1Q9NSU2 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TREX1Q9NSU2 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.26■□□□□ 0.19
TREX1Q9NSU2 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TREX1Q9NSU2 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC16.26■□□□□ 0.19
TREX1Q9NSU2 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TREX1Q9NSU2 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.26■□□□□ 0.19
TREX1Q9NSU2 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.26■□□□□ 0.19
TREX1Q9NSU2 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
TREX1Q9NSU2 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TREX1Q9NSU2 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 AC142381.1-201ENST00000426099 345 ntBASIC16.25■□□□□ 0.19
TREX1Q9NSU2 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 FAM86C2P-203ENST00000528684 1004 ntBASIC16.25■□□□□ 0.19
TREX1Q9NSU2 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 AC243562.1-201ENST00000560672 389 ntBASIC16.25■□□□□ 0.19
TREX1Q9NSU2 NKG7-205ENST00000600427 520 ntTSL 3 BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.25■□□□□ 0.19
TREX1Q9NSU2 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
TREX1Q9NSU2 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.24■□□□□ 0.19
TREX1Q9NSU2 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.24■□□□□ 0.19
TREX1Q9NSU2 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TREX1Q9NSU2 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TREX1Q9NSU2 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
TREX1Q9NSU2 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TREX1Q9NSU2 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC16.24■□□□□ 0.19
TREX1Q9NSU2 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TREX1Q9NSU2 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
TREX1Q9NSU2 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC16.24■□□□□ 0.19
TREX1Q9NSU2 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TREX1Q9NSU2 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TREX1Q9NSU2 PMP22-202ENST00000395936 816 ntTSL 3 BASIC16.24■□□□□ 0.19
TREX1Q9NSU2 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC16.24■□□□□ 0.19
TREX1Q9NSU2 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC16.24■□□□□ 0.19
TREX1Q9NSU2 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC16.24■□□□□ 0.19
TREX1Q9NSU2 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TREX1Q9NSU2 RN7SL589P-201ENST00000481268 310 ntBASIC16.24■□□□□ 0.19
TREX1Q9NSU2 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC16.24■□□□□ 0.19
TREX1Q9NSU2 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC16.24■□□□□ 0.19
TREX1Q9NSU2 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC16.24■□□□□ 0.19
TREX1Q9NSU2 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC16.24■□□□□ 0.19
TREX1Q9NSU2 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.24■□□□□ 0.19
TREX1Q9NSU2 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC16.24■□□□□ 0.19
TREX1Q9NSU2 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC16.24■□□□□ 0.19
TREX1Q9NSU2 AC061975.2-201ENST00000581722 295 ntBASIC16.24■□□□□ 0.19
TREX1Q9NSU2 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC16.24■□□□□ 0.19
TREX1Q9NSU2 AC027307.2-201ENST00000591252 911 ntBASIC16.24■□□□□ 0.19
TREX1Q9NSU2 SPTSSB-204ENST00000617024 1292 ntBASIC16.24■□□□□ 0.19
TREX1Q9NSU2 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TREX1Q9NSU2 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms