Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC16.9■□□□□ 0.3
PCDH9Q9HC56 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH9Q9HC56 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.9■□□□□ 0.3
PCDH9Q9HC56 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH9Q9HC56 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH9Q9HC56 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH9Q9HC56 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH9Q9HC56 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH9Q9HC56 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH9Q9HC56 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH9Q9HC56 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC16.9■□□□□ 0.3
PCDH9Q9HC56 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC16.9■□□□□ 0.3
PCDH9Q9HC56 NMU-202ENST00000505262 693 ntTSL 3 BASIC16.9■□□□□ 0.3
PCDH9Q9HC56 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC16.9■□□□□ 0.3
PCDH9Q9HC56 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
PCDH9Q9HC56 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC16.9■□□□□ 0.3
PCDH9Q9HC56 AL513190.1-201ENST00000621254 727 ntBASIC16.9■□□□□ 0.3
PCDH9Q9HC56 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.9■□□□□ 0.3
PCDH9Q9HC56 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH9Q9HC56 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH9Q9HC56 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH9Q9HC56 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH9Q9HC56 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC16.9■□□□□ 0.3
PCDH9Q9HC56 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH9Q9HC56 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH9Q9HC56 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
PCDH9Q9HC56 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
PCDH9Q9HC56 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.3
PCDH9Q9HC56 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
PCDH9Q9HC56 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
PCDH9Q9HC56 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.89■□□□□ 0.29
PCDH9Q9HC56 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PCDH9Q9HC56 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PCDH9Q9HC56 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC16.89■□□□□ 0.29
PCDH9Q9HC56 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.89■□□□□ 0.29
PCDH9Q9HC56 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
PCDH9Q9HC56 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PCDH9Q9HC56 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PCDH9Q9HC56 RNU1-129P-201ENST00000384064 167 ntBASIC16.89■□□□□ 0.29
PCDH9Q9HC56 FALEC-201ENST00000416894 566 ntTSL 3 BASIC16.89■□□□□ 0.29
PCDH9Q9HC56 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC16.89■□□□□ 0.29
PCDH9Q9HC56 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
PCDH9Q9HC56 SMN2-210ENST00000511812 867 ntTSL 2 BASIC16.89■□□□□ 0.29
PCDH9Q9HC56 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC16.89■□□□□ 0.29
PCDH9Q9HC56 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC16.89■□□□□ 0.29
PCDH9Q9HC56 MIR3909-201ENST00000579518 119 ntBASIC16.89■□□□□ 0.29
PCDH9Q9HC56 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC16.89■□□□□ 0.29
PCDH9Q9HC56 U1.21-201ENST00000580816 167 ntBASIC16.89■□□□□ 0.29
PCDH9Q9HC56 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC16.89■□□□□ 0.29
PCDH9Q9HC56 AC021097.1-201ENST00000607902 574 ntBASIC16.89■□□□□ 0.29
PCDH9Q9HC56 MED16-214ENST00000617672 554 ntTSL 5 BASIC16.89■□□□□ 0.29
PCDH9Q9HC56 AC092865.6-201ENST00000642101 219 ntBASIC16.89■□□□□ 0.29
PCDH9Q9HC56 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.89■□□□□ 0.29
PCDH9Q9HC56 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
PCDH9Q9HC56 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
PCDH9Q9HC56 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PCDH9Q9HC56 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PCDH9Q9HC56 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PCDH9Q9HC56 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PCDH9Q9HC56 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PCDH9Q9HC56 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
PCDH9Q9HC56 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.89■□□□□ 0.29
PCDH9Q9HC56 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PCDH9Q9HC56 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PCDH9Q9HC56 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
PCDH9Q9HC56 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC16.88■□□□□ 0.29
PCDH9Q9HC56 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PCDH9Q9HC56 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PCDH9Q9HC56 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
PCDH9Q9HC56 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
PCDH9Q9HC56 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
PCDH9Q9HC56 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
PCDH9Q9HC56 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PCDH9Q9HC56 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
PCDH9Q9HC56 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PCDH9Q9HC56 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PCDH9Q9HC56 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC16.88■□□□□ 0.29
PCDH9Q9HC56 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.88■□□□□ 0.29
PCDH9Q9HC56 CD99-202ENST00000381180 530 ntTSL 2 BASIC16.88■□□□□ 0.29
PCDH9Q9HC56 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC16.88■□□□□ 0.29
PCDH9Q9HC56 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC16.88■□□□□ 0.29
PCDH9Q9HC56 PGAM5P1-201ENST00000518923 814 ntBASIC16.88■□□□□ 0.29
PCDH9Q9HC56 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC16.88■□□□□ 0.29
PCDH9Q9HC56 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.88■□□□□ 0.29
PCDH9Q9HC56 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC16.88■□□□□ 0.29
PCDH9Q9HC56 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PCDH9Q9HC56 PDPK2P-202ENST00000562415 1191 ntBASIC16.88■□□□□ 0.29
PCDH9Q9HC56 AC040169.1-201ENST00000565382 521 ntBASIC16.88■□□□□ 0.29
PCDH9Q9HC56 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
PCDH9Q9HC56 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PCDH9Q9HC56 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PCDH9Q9HC56 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
PCDH9Q9HC56 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PCDH9Q9HC56 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PCDH9Q9HC56 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
PCDH9Q9HC56 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PCDH9Q9HC56 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
PCDH9Q9HC56 PMS2P7-201ENST00000506558 1336 ntBASIC16.88■□□□□ 0.29
PCDH9Q9HC56 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PCDH9Q9HC56 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms