Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC12.6□□□□□ -0.39
HIST1H1AQ02539 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
HIST1H1AQ02539 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC12.6□□□□□ -0.39
HIST1H1AQ02539 METTL23-204ENST00000586752 904 ntTSL 2 BASIC12.6□□□□□ -0.39
HIST1H1AQ02539 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
HIST1H1AQ02539 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
HIST1H1AQ02539 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HIST1H1AQ02539 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC12.6□□□□□ -0.39
HIST1H1AQ02539 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HIST1H1AQ02539 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HIST1H1AQ02539 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HIST1H1AQ02539 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HIST1H1AQ02539 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
HIST1H1AQ02539 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC12.6□□□□□ -0.39
HIST1H1AQ02539 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
HIST1H1AQ02539 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC12.6□□□□□ -0.39
HIST1H1AQ02539 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
HIST1H1AQ02539 ALOX12P2-203ENST00000570921 1945 ntBASIC12.6□□□□□ -0.39
HIST1H1AQ02539 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
HIST1H1AQ02539 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
HIST1H1AQ02539 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HIST1H1AQ02539 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
HIST1H1AQ02539 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC12.6□□□□□ -0.39
HIST1H1AQ02539 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HIST1H1AQ02539 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HIST1H1AQ02539 ME2P1-201ENST00000426028 1970 ntBASIC12.6□□□□□ -0.39
HIST1H1AQ02539 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 POLL-206ENST00000370172 2308 ntTSL 2 BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 HIST2H3DP1-201ENST00000401004 416 ntBASIC12.59□□□□□ -0.39
HIST1H1AQ02539 SAPCD2P3-201ENST00000455031 850 ntBASIC12.59□□□□□ -0.39
HIST1H1AQ02539 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 NMU-205ENST00000511469 756 ntTSL 3 BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 REXO1L6P-202ENST00000619970 1078 ntBASIC12.59□□□□□ -0.39
HIST1H1AQ02539 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 AC006277.1-201ENST00000624348 1610 ntBASIC12.59□□□□□ -0.39
HIST1H1AQ02539 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HIST1H1AQ02539 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.39
HIST1H1AQ02539 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC12.58□□□□□ -0.39
HIST1H1AQ02539 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC12.58□□□□□ -0.39
HIST1H1AQ02539 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC12.58□□□□□ -0.39
HIST1H1AQ02539 AL365203.3-201ENST00000609742 2057 ntBASIC12.58□□□□□ -0.39
HIST1H1AQ02539 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC12.58□□□□□ -0.4
HIST1H1AQ02539 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC12.58□□□□□ -0.4
HIST1H1AQ02539 TOP3BP1-201ENST00000420768 1380 ntBASIC12.58□□□□□ -0.4
HIST1H1AQ02539 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC12.58□□□□□ -0.4
HIST1H1AQ02539 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC12.58□□□□□ -0.4
HIST1H1AQ02539 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC12.58□□□□□ -0.4
HIST1H1AQ02539 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
HIST1H1AQ02539 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms