Protein–RNA interactions for Protein: P53621

COPA, Coatomer subunit alpha, humanhuman

Predictions only

Length 1,224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPAP53621 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.9■□□□□ 0.3
COPAP53621 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
COPAP53621 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.9■□□□□ 0.3
COPAP53621 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COPAP53621 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.9■□□□□ 0.3
COPAP53621 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COPAP53621 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
COPAP53621 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
COPAP53621 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.9■□□□□ 0.3
COPAP53621 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.9■□□□□ 0.3
COPAP53621 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COPAP53621 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16.9■□□□□ 0.3
COPAP53621 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COPAP53621 SPDYE14P-201ENST00000442619 822 ntBASIC16.9■□□□□ 0.3
COPAP53621 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC16.9■□□□□ 0.3
COPAP53621 SSH2-211ENST00000590153 570 ntTSL 4 BASIC16.9■□□□□ 0.3
COPAP53621 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC16.9■□□□□ 0.3
COPAP53621 AP001350.2-201ENST00000625104 1094 ntBASIC16.9■□□□□ 0.3
COPAP53621 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC16.9■□□□□ 0.3
COPAP53621 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
COPAP53621 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
COPAP53621 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
COPAP53621 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
COPAP53621 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
COPAP53621 AC022188.1-201ENST00000620960 1664 ntBASIC16.9■□□□□ 0.3
COPAP53621 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COPAP53621 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COPAP53621 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COPAP53621 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COPAP53621 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COPAP53621 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COPAP53621 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.9■□□□□ 0.3
COPAP53621 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COPAP53621 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COPAP53621 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
COPAP53621 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.89■□□□□ 0.3
COPAP53621 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
COPAP53621 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.3
COPAP53621 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
COPAP53621 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
COPAP53621 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COPAP53621 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
COPAP53621 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COPAP53621 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COPAP53621 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.89■□□□□ 0.29
COPAP53621 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COPAP53621 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.89■□□□□ 0.29
COPAP53621 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COPAP53621 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
COPAP53621 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COPAP53621 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COPAP53621 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
COPAP53621 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COPAP53621 PTMS-202ENST00000389462 773 ntTSL 2 BASIC16.89■□□□□ 0.29
COPAP53621 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COPAP53621 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC16.89■□□□□ 0.29
COPAP53621 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC16.89■□□□□ 0.29
COPAP53621 AC026150.2-201ENST00000564693 1156 ntBASIC16.89■□□□□ 0.29
COPAP53621 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COPAP53621 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COPAP53621 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC16.89■□□□□ 0.29
COPAP53621 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COPAP53621 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COPAP53621 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COPAP53621 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COPAP53621 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
COPAP53621 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
COPAP53621 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COPAP53621 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
COPAP53621 TUBB3P1-201ENST00000405796 1332 ntBASIC16.89■□□□□ 0.29
COPAP53621 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COPAP53621 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COPAP53621 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.89■□□□□ 0.29
COPAP53621 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COPAP53621 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COPAP53621 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
COPAP53621 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COPAP53621 AL021920.2-201ENST00000624828 1351 ntBASIC16.89■□□□□ 0.29
COPAP53621 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC16.89■□□□□ 0.29
COPAP53621 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
COPAP53621 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.88■□□□□ 0.29
COPAP53621 AC007950.2-201ENST00000615045 2347 ntBASIC16.88■□□□□ 0.29
COPAP53621 AC016027.1-202ENST00000607927 1699 ntBASIC16.88■□□□□ 0.29
COPAP53621 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.88■□□□□ 0.29
COPAP53621 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
COPAP53621 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.88■□□□□ 0.29
COPAP53621 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COPAP53621 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
COPAP53621 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COPAP53621 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COPAP53621 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COPAP53621 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
COPAP53621 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC16.88■□□□□ 0.29
COPAP53621 SLC25A39P2-201ENST00000537614 270 ntBASIC16.88■□□□□ 0.29
COPAP53621 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC16.88■□□□□ 0.29
COPAP53621 MIR4492-201ENST00000581627 80 ntBASIC16.88■□□□□ 0.29
COPAP53621 CYP2A7P1-201ENST00000595391 815 ntBASIC16.88■□□□□ 0.29
COPAP53621 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.88■□□□□ 0.29
COPAP53621 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
COPAP53621 AC008267.7-201ENST00000624570 1194 ntBASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms