Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
CTCFP49711 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC18.83■□□□□ 0.6
CTCFP49711 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CTCFP49711 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC18.83■□□□□ 0.6
CTCFP49711 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CTCFP49711 AL139384.1-201ENST00000612143 3047 ntBASIC18.82■□□□□ 0.6
CTCFP49711 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CTCFP49711 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CTCFP49711 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CTCFP49711 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC18.82■□□□□ 0.6
CTCFP49711 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC18.82■□□□□ 0.6
CTCFP49711 RN7SL399P-201ENST00000471648 279 ntBASIC18.82■□□□□ 0.6
CTCFP49711 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC18.82■□□□□ 0.6
CTCFP49711 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC18.82■□□□□ 0.6
CTCFP49711 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
CTCFP49711 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC18.82■□□□□ 0.6
CTCFP49711 AC074044.1-201ENST00000609673 707 ntBASIC18.82■□□□□ 0.6
CTCFP49711 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC18.82■□□□□ 0.6
CTCFP49711 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CTCFP49711 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CTCFP49711 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CTCFP49711 HARS-204ENST00000438307 1789 ntTSL 2 BASIC18.82■□□□□ 0.6
CTCFP49711 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CTCFP49711 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CTCFP49711 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CTCFP49711 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CTCFP49711 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CTCFP49711 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CTCFP49711 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CTCFP49711 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CTCFP49711 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CTCFP49711 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CTCFP49711 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CTCFP49711 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC18.81■□□□□ 0.6
CTCFP49711 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTCFP49711 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CTCFP49711 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.81■□□□□ 0.6
CTCFP49711 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTCFP49711 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
CTCFP49711 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CTCFP49711 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTCFP49711 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CTCFP49711 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.81■□□□□ 0.6
CTCFP49711 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTCFP49711 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC18.81■□□□□ 0.6
CTCFP49711 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CTCFP49711 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTCFP49711 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.81■□□□□ 0.6
CTCFP49711 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTCFP49711 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTCFP49711 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
CTCFP49711 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
CTCFP49711 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CTCFP49711 RAD18-204ENST00000418463 563 ntTSL 4 BASIC18.81■□□□□ 0.6
CTCFP49711 RAD18-205ENST00000421052 582 ntTSL 3 BASIC18.81■□□□□ 0.6
CTCFP49711 Z93015.1-201ENST00000451718 390 ntBASIC18.81■□□□□ 0.6
CTCFP49711 IMP3P2-201ENST00000489760 475 ntBASIC18.81■□□□□ 0.6
CTCFP49711 HIST2H2BC-201ENST00000498492 580 ntBASIC18.81■□□□□ 0.6
CTCFP49711 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC18.81■□□□□ 0.6
CTCFP49711 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC18.81■□□□□ 0.6
CTCFP49711 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CTCFP49711 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTCFP49711 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTCFP49711 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTCFP49711 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTCFP49711 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.81■□□□□ 0.6
CTCFP49711 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.81■□□□□ 0.6
CTCFP49711 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.81■□□□□ 0.6
CTCFP49711 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTCFP49711 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CTCFP49711 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC18.81■□□□□ 0.6
CTCFP49711 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC18.81■□□□□ 0.6
CTCFP49711 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CTCFP49711 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CTCFP49711 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CTCFP49711 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CTCFP49711 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.8■□□□□ 0.6
CTCFP49711 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CTCFP49711 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CTCFP49711 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CTCFP49711 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CTCFP49711 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC18.8■□□□□ 0.6
CTCFP49711 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
CTCFP49711 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CTCFP49711 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.8■□□□□ 0.6
CTCFP49711 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CTCFP49711 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CTCFP49711 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CTCFP49711 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.8■□□□□ 0.6
CTCFP49711 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CTCFP49711 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CTCFP49711 HLA-DQB2-229ENST00000411527 1059 ntBASIC18.8■□□□□ 0.6
CTCFP49711 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC18.8■□□□□ 0.6
CTCFP49711 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC18.8■□□□□ 0.6
CTCFP49711 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC18.8■□□□□ 0.6
CTCFP49711 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CTCFP49711 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC18.8■□□□□ 0.6
CTCFP49711 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC18.8■□□□□ 0.6
CTCFP49711 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CTCFP49711 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms