Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HOXA1P49639 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
HOXA1P49639 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXA1P49639 AC097376.2-205ENST00000610159 5334 ntBASIC13.66□□□□□ -0.22
HOXA1P49639 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
HOXA1P49639 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXA1P49639 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC13.66□□□□□ -0.22
HOXA1P49639 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXA1P49639 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC13.66□□□□□ -0.22
HOXA1P49639 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC13.66□□□□□ -0.22
HOXA1P49639 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXA1P49639 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXA1P49639 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HOXA1P49639 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
HOXA1P49639 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HOXA1P49639 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC13.66□□□□□ -0.22
HOXA1P49639 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
HOXA1P49639 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC13.66□□□□□ -0.22
HOXA1P49639 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HOXA1P49639 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
HOXA1P49639 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC13.66□□□□□ -0.22
HOXA1P49639 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC13.66□□□□□ -0.22
HOXA1P49639 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC13.66□□□□□ -0.22
HOXA1P49639 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC13.66□□□□□ -0.22
HOXA1P49639 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC13.66□□□□□ -0.22
HOXA1P49639 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC13.66□□□□□ -0.22
HOXA1P49639 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC13.66□□□□□ -0.22
HOXA1P49639 RBM42-202ENST00000586618 771 ntTSL 3 BASIC13.66□□□□□ -0.22
HOXA1P49639 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC13.66□□□□□ -0.22
HOXA1P49639 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC13.66□□□□□ -0.22
HOXA1P49639 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXA1P49639 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC13.66□□□□□ -0.22
HOXA1P49639 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
HOXA1P49639 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXA1P49639 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC13.66□□□□□ -0.22
HOXA1P49639 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXA1P49639 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXA1P49639 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC13.66□□□□□ -0.22
HOXA1P49639 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXA1P49639 MED25-212ENST00000618715 1467 ntTSL 5 BASIC13.66□□□□□ -0.22
HOXA1P49639 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXA1P49639 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXA1P49639 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXA1P49639 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXA1P49639 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC13.66□□□□□ -0.22
HOXA1P49639 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC13.66□□□□□ -0.22
HOXA1P49639 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXA1P49639 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXA1P49639 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXA1P49639 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
HOXA1P49639 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXA1P49639 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC13.66□□□□□ -0.22
HOXA1P49639 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
HOXA1P49639 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
HOXA1P49639 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXA1P49639 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXA1P49639 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXA1P49639 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
HOXA1P49639 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXA1P49639 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXA1P49639 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC13.65□□□□□ -0.22
HOXA1P49639 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXA1P49639 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXA1P49639 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC13.65□□□□□ -0.22
HOXA1P49639 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXA1P49639 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXA1P49639 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXA1P49639 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXA1P49639 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HOXA1P49639 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXA1P49639 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXA1P49639 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC13.65□□□□□ -0.22
HOXA1P49639 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
HOXA1P49639 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HOXA1P49639 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC13.65□□□□□ -0.22
HOXA1P49639 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HOXA1P49639 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC13.65□□□□□ -0.22
HOXA1P49639 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXA1P49639 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXA1P49639 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC13.65□□□□□ -0.22
HOXA1P49639 BX276092.5-203ENST00000456199 560 ntBASIC13.65□□□□□ -0.22
HOXA1P49639 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC13.65□□□□□ -0.22
HOXA1P49639 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC13.65□□□□□ -0.22
HOXA1P49639 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC13.65□□□□□ -0.22
HOXA1P49639 PPOX-219ENST00000544598 813 ntTSL 2 BASIC13.65□□□□□ -0.22
HOXA1P49639 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC13.65□□□□□ -0.22
HOXA1P49639 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC13.65□□□□□ -0.22
HOXA1P49639 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC13.65□□□□□ -0.22
HOXA1P49639 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HOXA1P49639 AC011467.2-201ENST00000598425 242 ntBASIC13.65□□□□□ -0.22
HOXA1P49639 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
HOXA1P49639 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC13.65□□□□□ -0.22
HOXA1P49639 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HOXA1P49639 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC13.65□□□□□ -0.22
HOXA1P49639 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXA1P49639 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXA1P49639 AL021920.2-201ENST00000624828 1351 ntBASIC13.65□□□□□ -0.22
HOXA1P49639 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
HOXA1P49639 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
HOXA1P49639 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC13.65□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms