Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CIITAP33076 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CIITAP33076 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
CIITAP33076 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC18.32■□□□□ 0.52
CIITAP33076 AL136982.4-201ENST00000437689 1740 ntBASIC18.32■□□□□ 0.52
CIITAP33076 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC18.32■□□□□ 0.52
CIITAP33076 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC18.32■□□□□ 0.52
CIITAP33076 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CIITAP33076 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CIITAP33076 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CIITAP33076 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CIITAP33076 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CIITAP33076 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC18.32■□□□□ 0.52
CIITAP33076 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC18.32■□□□□ 0.52
CIITAP33076 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC18.32■□□□□ 0.52
CIITAP33076 AL079307.3-201ENST00000556114 283 ntBASIC18.32■□□□□ 0.52
CIITAP33076 DUT-210ENST00000559935 569 ntTSL 3 BASIC18.32■□□□□ 0.52
CIITAP33076 AL138828.2-201ENST00000615812 383 ntBASIC18.32■□□□□ 0.52
CIITAP33076 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CIITAP33076 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CIITAP33076 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC18.32■□□□□ 0.52
CIITAP33076 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC18.32■□□□□ 0.52
CIITAP33076 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC18.32■□□□□ 0.52
CIITAP33076 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
CIITAP33076 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CIITAP33076 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CIITAP33076 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC18.32■□□□□ 0.52
CIITAP33076 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CIITAP33076 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CIITAP33076 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CIITAP33076 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CIITAP33076 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CIITAP33076 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CIITAP33076 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CIITAP33076 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC18.32■□□□□ 0.52
CIITAP33076 GCK-209ENST00000616242 2260 ntTSL 5 BASIC18.32■□□□□ 0.52
CIITAP33076 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
CIITAP33076 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CIITAP33076 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CIITAP33076 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CIITAP33076 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC18.31■□□□□ 0.52
CIITAP33076 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CIITAP33076 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC18.31■□□□□ 0.52
CIITAP33076 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CIITAP33076 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CIITAP33076 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CIITAP33076 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CIITAP33076 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CIITAP33076 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
CIITAP33076 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
CIITAP33076 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CIITAP33076 MIR770-201ENST00000390219 98 ntBASIC18.31■□□□□ 0.52
CIITAP33076 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CIITAP33076 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC18.31■□□□□ 0.52
CIITAP33076 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC18.31■□□□□ 0.52
CIITAP33076 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC18.31■□□□□ 0.52
CIITAP33076 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC18.31■□□□□ 0.52
CIITAP33076 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC18.31■□□□□ 0.52
CIITAP33076 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
CIITAP33076 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CIITAP33076 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC18.31■□□□□ 0.52
CIITAP33076 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
CIITAP33076 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CIITAP33076 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
CIITAP33076 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
CIITAP33076 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CIITAP33076 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CIITAP33076 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC18.31■□□□□ 0.52
CIITAP33076 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CIITAP33076 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC18.31■□□□□ 0.52
CIITAP33076 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CIITAP33076 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC18.31■□□□□ 0.52
CIITAP33076 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC18.31■□□□□ 0.52
CIITAP33076 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC18.31■□□□□ 0.52
CIITAP33076 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CIITAP33076 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
CIITAP33076 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CIITAP33076 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CIITAP33076 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CIITAP33076 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
CIITAP33076 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CIITAP33076 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC18.3■□□□□ 0.52
CIITAP33076 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
CIITAP33076 AL596087.1-201ENST00000400979 1969 ntBASIC18.3■□□□□ 0.52
CIITAP33076 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
CIITAP33076 CETN4P-206ENST00000642099 2168 ntBASIC18.3■□□□□ 0.52
CIITAP33076 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC18.3■□□□□ 0.52
CIITAP33076 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
CIITAP33076 RPS19-201ENST00000221975 500 ntTSL 3 BASIC18.3■□□□□ 0.52
CIITAP33076 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CIITAP33076 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CIITAP33076 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC18.3■□□□□ 0.52
CIITAP33076 RPL37AP1-201ENST00000412502 279 ntBASIC18.3■□□□□ 0.52
CIITAP33076 AL080243.2-201ENST00000418783 582 ntBASIC18.3■□□□□ 0.52
CIITAP33076 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CIITAP33076 MTND6P24-201ENST00000440466 518 ntBASIC18.3■□□□□ 0.52
CIITAP33076 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CIITAP33076 LY6E-204ENST00000519546 971 ntTSL 2 BASIC18.3■□□□□ 0.52
CIITAP33076 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC18.3■□□□□ 0.52
CIITAP33076 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms