Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
HOXD3P31249 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HOXD3P31249 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC12.66□□□□□ -0.38
HOXD3P31249 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC12.66□□□□□ -0.38
HOXD3P31249 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC12.66□□□□□ -0.38
HOXD3P31249 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HOXD3P31249 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HOXD3P31249 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HOXD3P31249 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC12.66□□□□□ -0.38
HOXD3P31249 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
HOXD3P31249 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
HOXD3P31249 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HOXD3P31249 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HOXD3P31249 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC12.66□□□□□ -0.38
HOXD3P31249 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
HOXD3P31249 VMA21-202ENST00000370361 693 ntTSL 5 BASIC12.66□□□□□ -0.38
HOXD3P31249 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC12.66□□□□□ -0.38
HOXD3P31249 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC12.66□□□□□ -0.38
HOXD3P31249 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC12.66□□□□□ -0.38
HOXD3P31249 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC12.66□□□□□ -0.38
HOXD3P31249 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC12.66□□□□□ -0.38
HOXD3P31249 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
HOXD3P31249 PPP6R2P1-201ENST00000450880 1275 ntBASIC12.66□□□□□ -0.38
HOXD3P31249 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC12.66□□□□□ -0.38
HOXD3P31249 AC105233.2-201ENST00000523697 349 ntBASIC12.66□□□□□ -0.38
HOXD3P31249 AC069120.2-201ENST00000524091 540 ntBASIC12.66□□□□□ -0.38
HOXD3P31249 AF228730.5-201ENST00000530288 346 ntBASIC12.66□□□□□ -0.38
HOXD3P31249 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HOXD3P31249 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC12.66□□□□□ -0.38
HOXD3P31249 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HOXD3P31249 AL138918.1-201ENST00000568306 659 ntBASIC12.66□□□□□ -0.38
HOXD3P31249 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HOXD3P31249 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC12.66□□□□□ -0.38
HOXD3P31249 YTHDF3-AS1-201ENST00000603538 718 ntBASIC12.66□□□□□ -0.38
HOXD3P31249 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC12.66□□□□□ -0.38
HOXD3P31249 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC12.66□□□□□ -0.38
HOXD3P31249 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC12.66□□□□□ -0.38
HOXD3P31249 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC12.66□□□□□ -0.38
HOXD3P31249 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
HOXD3P31249 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HOXD3P31249 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HOXD3P31249 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
HOXD3P31249 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HOXD3P31249 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HOXD3P31249 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC12.66□□□□□ -0.38
HOXD3P31249 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
HOXD3P31249 AC099398.1-201ENST00000567919 2776 ntBASIC12.66□□□□□ -0.38
HOXD3P31249 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HOXD3P31249 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC12.66□□□□□ -0.38
HOXD3P31249 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC12.66□□□□□ -0.38
HOXD3P31249 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC12.66□□□□□ -0.38
HOXD3P31249 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
HOXD3P31249 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC12.66□□□□□ -0.38
HOXD3P31249 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC12.66□□□□□ -0.38
HOXD3P31249 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC12.66□□□□□ -0.38
HOXD3P31249 AC073439.1-201ENST00000624121 1774 ntBASIC12.66□□□□□ -0.38
HOXD3P31249 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
HOXD3P31249 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
HOXD3P31249 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
HOXD3P31249 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
HOXD3P31249 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HOXD3P31249 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HOXD3P31249 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HOXD3P31249 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
HOXD3P31249 PCGF3-213ENST00000620529 1899 ntBASIC12.65□□□□□ -0.38
HOXD3P31249 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC12.65□□□□□ -0.38
HOXD3P31249 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HOXD3P31249 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC12.65□□□□□ -0.38
HOXD3P31249 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HOXD3P31249 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC12.65□□□□□ -0.38
HOXD3P31249 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
HOXD3P31249 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HOXD3P31249 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC12.65□□□□□ -0.38
HOXD3P31249 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
HOXD3P31249 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC12.65□□□□□ -0.38
HOXD3P31249 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HOXD3P31249 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC12.65□□□□□ -0.38
HOXD3P31249 GGT3P-204ENST00000453783 1664 ntBASIC12.65□□□□□ -0.38
HOXD3P31249 NF2-208ENST00000403435 2568 ntTSL 5 BASIC12.65□□□□□ -0.38
HOXD3P31249 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
HOXD3P31249 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC12.65□□□□□ -0.38
HOXD3P31249 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HOXD3P31249 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HOXD3P31249 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
HOXD3P31249 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC12.65□□□□□ -0.38
HOXD3P31249 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC12.65□□□□□ -0.38
HOXD3P31249 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC12.65□□□□□ -0.38
HOXD3P31249 ALG1L8P-201ENST00000533887 760 ntBASIC12.65□□□□□ -0.38
HOXD3P31249 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC12.65□□□□□ -0.38
HOXD3P31249 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC12.65□□□□□ -0.38
HOXD3P31249 AP000842.3-202ENST00000569238 1080 ntBASIC12.65□□□□□ -0.38
HOXD3P31249 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HOXD3P31249 LINC02560-201ENST00000596379 459 ntBASIC12.65□□□□□ -0.38
HOXD3P31249 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC12.65□□□□□ -0.38
HOXD3P31249 AC012645.4-201ENST00000610691 1061 ntBASIC12.65□□□□□ -0.38
HOXD3P31249 AC011676.5-201ENST00000624864 2660 ntBASIC12.65□□□□□ -0.38
HOXD3P31249 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC12.65□□□□□ -0.38
HOXD3P31249 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC12.65□□□□□ -0.38
HOXD3P31249 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC12.65□□□□□ -0.38
HOXD3P31249 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms