Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A5P29400 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL4A5P29400 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A5P29400 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A5P29400 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC19.23■□□□□ 0.67
COL4A5P29400 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
COL4A5P29400 HARS-202ENST00000415192 1401 ntTSL 2 BASIC19.23■□□□□ 0.67
COL4A5P29400 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A5P29400 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC19.23■□□□□ 0.67
COL4A5P29400 AC005915.1-201ENST00000624912 2018 ntBASIC19.23■□□□□ 0.67
COL4A5P29400 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A5P29400 AL592424.1-201ENST00000563624 1536 ntBASIC19.23■□□□□ 0.67
COL4A5P29400 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
COL4A5P29400 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC19.23■□□□□ 0.67
COL4A5P29400 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A5P29400 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A5P29400 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
COL4A5P29400 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A5P29400 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC19.23■□□□□ 0.67
COL4A5P29400 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A5P29400 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A5P29400 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC19.23■□□□□ 0.67
COL4A5P29400 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A5P29400 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A5P29400 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A5P29400 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC19.23■□□□□ 0.67
COL4A5P29400 AC104306.2-201ENST00000451877 341 ntBASIC19.23■□□□□ 0.67
COL4A5P29400 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC19.23■□□□□ 0.67
COL4A5P29400 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC19.23■□□□□ 0.67
COL4A5P29400 AL008638.5-201ENST00000623814 1298 ntBASIC19.23■□□□□ 0.67
COL4A5P29400 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC19.23■□□□□ 0.67
COL4A5P29400 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A5P29400 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
COL4A5P29400 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL4A5P29400 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC19.22■□□□□ 0.67
COL4A5P29400 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC19.22■□□□□ 0.67
COL4A5P29400 AC078925.2-201ENST00000624013 1973 ntBASIC19.22■□□□□ 0.67
COL4A5P29400 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.22■□□□□ 0.67
COL4A5P29400 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A5P29400 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC19.22■□□□□ 0.67
COL4A5P29400 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A5P29400 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A5P29400 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC19.22■□□□□ 0.67
COL4A5P29400 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC19.22■□□□□ 0.67
COL4A5P29400 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC19.22■□□□□ 0.67
COL4A5P29400 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC19.22■□□□□ 0.67
COL4A5P29400 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC19.22■□□□□ 0.67
COL4A5P29400 RPL13AP25-201ENST00000484130 612 ntBASIC19.22■□□□□ 0.67
COL4A5P29400 AC025279.2-201ENST00000569730 653 ntBASIC19.22■□□□□ 0.67
COL4A5P29400 AC107373.2-201ENST00000607735 490 ntBASIC19.22■□□□□ 0.67
COL4A5P29400 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A5P29400 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC19.22■□□□□ 0.67
COL4A5P29400 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
COL4A5P29400 AL607033.1-201ENST00000623900 1599 ntBASIC19.22■□□□□ 0.67
COL4A5P29400 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC19.22■□□□□ 0.67
COL4A5P29400 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
COL4A5P29400 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A5P29400 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A5P29400 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL4A5P29400 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A5P29400 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A5P29400 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC19.21■□□□□ 0.67
COL4A5P29400 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC19.21■□□□□ 0.67
COL4A5P29400 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A5P29400 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC19.21■□□□□ 0.67
COL4A5P29400 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
COL4A5P29400 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC19.21■□□□□ 0.67
COL4A5P29400 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC19.21■□□□□ 0.67
COL4A5P29400 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC19.21■□□□□ 0.67
COL4A5P29400 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A5P29400 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A5P29400 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC19.21■□□□□ 0.67
COL4A5P29400 AC136604.1-201ENST00000418535 575 ntBASIC19.21■□□□□ 0.67
COL4A5P29400 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A5P29400 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
COL4A5P29400 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
COL4A5P29400 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
COL4A5P29400 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A5P29400 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
COL4A5P29400 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC19.21■□□□□ 0.67
COL4A5P29400 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
COL4A5P29400 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
COL4A5P29400 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC19.21■□□□□ 0.67
COL4A5P29400 NF2-208ENST00000403435 2568 ntTSL 5 BASIC19.21■□□□□ 0.67
COL4A5P29400 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A5P29400 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A5P29400 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC19.21■□□□□ 0.67
COL4A5P29400 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A5P29400 VILL-207ENST00000465644 1857 ntTSL 5 BASIC19.21■□□□□ 0.67
COL4A5P29400 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.21■□□□□ 0.67
COL4A5P29400 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
COL4A5P29400 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC19.21■□□□□ 0.67
COL4A5P29400 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A5P29400 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL4A5P29400 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
COL4A5P29400 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A5P29400 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL4A5P29400 TEX30-203ENST00000376022 828 ntTSL 2 BASIC19.2■□□□□ 0.66
COL4A5P29400 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
COL4A5P29400 AL590640.2-201ENST00000457038 527 ntBASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms