Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CDH3P22223 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.1■□□□□ 0.17
CDH3P22223 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.09■□□□□ 0.17
CDH3P22223 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH3P22223 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
CDH3P22223 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH3P22223 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.09■□□□□ 0.17
CDH3P22223 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CDH3P22223 AC060834.1-201ENST00000443027 2032 ntBASIC16.09■□□□□ 0.17
CDH3P22223 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
CDH3P22223 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH3P22223 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.09■□□□□ 0.17
CDH3P22223 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH3P22223 AC022188.1-201ENST00000620960 1664 ntBASIC16.09■□□□□ 0.17
CDH3P22223 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
CDH3P22223 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH3P22223 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH3P22223 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH3P22223 LBH-203ENST00000404397 543 ntTSL 4 BASIC16.09■□□□□ 0.17
CDH3P22223 AC004461.1-201ENST00000412461 403 ntBASIC16.09■□□□□ 0.17
CDH3P22223 ADH5P3-201ENST00000433842 1137 ntBASIC16.09■□□□□ 0.17
CDH3P22223 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC16.09■□□□□ 0.17
CDH3P22223 RN7SL589P-201ENST00000481268 310 ntBASIC16.09■□□□□ 0.17
CDH3P22223 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH3P22223 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
CDH3P22223 AL135744.1-201ENST00000565098 629 ntBASIC16.09■□□□□ 0.17
CDH3P22223 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC16.09■□□□□ 0.17
CDH3P22223 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC16.09■□□□□ 0.17
CDH3P22223 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH3P22223 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC16.09■□□□□ 0.17
CDH3P22223 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH3P22223 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CDH3P22223 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH3P22223 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.09■□□□□ 0.17
CDH3P22223 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH3P22223 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
CDH3P22223 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH3P22223 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH3P22223 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CDH3P22223 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH3P22223 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH3P22223 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC16.09■□□□□ 0.17
CDH3P22223 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CDH3P22223 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH3P22223 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.09■□□□□ 0.17
CDH3P22223 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CDH3P22223 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CDH3P22223 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC16.08■□□□□ 0.17
CDH3P22223 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.08■□□□□ 0.17
CDH3P22223 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CDH3P22223 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CDH3P22223 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CDH3P22223 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC16.08■□□□□ 0.17
CDH3P22223 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
CDH3P22223 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDH3P22223 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDH3P22223 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC16.08■□□□□ 0.16
CDH3P22223 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDH3P22223 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDH3P22223 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC16.08■□□□□ 0.16
CDH3P22223 AC092474.2-201ENST00000424288 719 ntBASIC16.08■□□□□ 0.16
CDH3P22223 METTL21AP1-201ENST00000438852 635 ntBASIC16.08■□□□□ 0.16
CDH3P22223 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC16.08■□□□□ 0.16
CDH3P22223 KRT8P48-201ENST00000515599 1220 ntBASIC16.08■□□□□ 0.16
CDH3P22223 AP002490.2-201ENST00000524791 560 ntBASIC16.08■□□□□ 0.16
CDH3P22223 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
CDH3P22223 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CDH3P22223 MIR3909-201ENST00000579518 119 ntBASIC16.08■□□□□ 0.16
CDH3P22223 AC022145.2-201ENST00000598203 171 ntBASIC16.08■□□□□ 0.16
CDH3P22223 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CDH3P22223 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
CDH3P22223 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.08■□□□□ 0.16
CDH3P22223 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CDH3P22223 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC16.08■□□□□ 0.16
CDH3P22223 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC16.08■□□□□ 0.16
CDH3P22223 AKAP8P1-201ENST00000434743 1349 ntBASIC16.08■□□□□ 0.16
CDH3P22223 KRT18P28-201ENST00000453838 1332 ntBASIC16.08■□□□□ 0.16
CDH3P22223 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC16.08■□□□□ 0.16
CDH3P22223 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDH3P22223 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDH3P22223 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.08■□□□□ 0.16
CDH3P22223 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.08■□□□□ 0.16
CDH3P22223 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDH3P22223 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC16.08■□□□□ 0.16
CDH3P22223 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.08■□□□□ 0.16
CDH3P22223 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CDH3P22223 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDH3P22223 AC006277.1-201ENST00000624348 1610 ntBASIC16.08■□□□□ 0.16
CDH3P22223 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC16.08■□□□□ 0.16
CDH3P22223 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CDH3P22223 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.08■□□□□ 0.16
CDH3P22223 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDH3P22223 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
CDH3P22223 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
CDH3P22223 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDH3P22223 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
CDH3P22223 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
CDH3P22223 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDH3P22223 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
CDH3P22223 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms